Brara.A00108.1

Description : serine hydroxymethyltransferase *(SHM) & serine hydroxymethyltransferase & EC_2.1 transferase transferring one-carbon group

Gene families : OG_42_0000626 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000626_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.A00108.1
Cluster	HCAA Clusters: Cluster_266

Target	Alias	Description	ECC score	Gene Family Method
90314	No alias	serine hydroxymethyltransferase 6	0.02	Orthogroups_2024-Update
Pp1s21_270V6	No alias	glycine hydroxymethyltransferase	0.03	Orthogroups_2024-Update
Pp1s79_54V6	No alias	glycine hydroxymethyltransferase	0.02	Orthogroups_2024-Update
Solyc02g091560	No alias	Serine hydroxymethyltransferase (AHRD V3.3 *** A0A0R4J3Y9_SOYBN)	0.04	Orthogroups_2024-Update
Solyc05g053810	No alias	Serine hydroxymethyltransferase (AHRD V3.3 *** M1BAA6_SOLTU)	0.03	Orthogroups_2024-Update
Sopen02g036190	No alias	Serine hydroxymethyltransferase	0.03	Orthogroups_2024-Update
evm.model.contig_2050.3	No alias	(at5g26780 : 637.0) Encodes a protein with serine...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
No GO annotation available for this sequence

Type	GO Term	Name	Evidence	Source
MF	GO:0004329	formate-tetrahydrofolate ligase activity	IEP	Predicted GO
BP	GO:0009767	photosynthetic electron transport chain	IEP	Predicted GO
MF	GO:0016780	phosphotransferase activity, for other substituted phosphate groups	IEP	Predicted GO
BP	GO:0022900	electron transport chain	IEP	Predicted GO
MF	GO:0030151	molybdenum ion binding	IEP	Predicted GO
MF	GO:0033743	peptide-methionine (R)-S-oxide reductase activity	IEP	Predicted GO
MF	GO:0042393	histone binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR039429	SHMT-like_dom	55	383

External Links

No external refs found!