Brara.A00264.1

Description : component *(NRPB1) of RNA polymerase II complex

Gene families : OG_42_0001434 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001434_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.A00264.1
Cluster	HCAA Clusters: Cluster_248

Target	Alias	Description	ECC score	Gene Family Method
A4A49_44191	No alias	dna-directed rna polymerase iii subunit 1	0.02	Orthogroups_2024-Update
HORVU5Hr1G114340.1	No alias	component *(NRPB1) of RNA polymerase II complex	0.03	Orthogroups_2024-Update
HORVU7Hr1G071660.5	No alias	component *(NRPB1) of RNA polymerase II complex	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	16Dec
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	16Dec
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	IEA	16Dec
BP	GO:0006366	transcription by RNA polymerase II	IEA	16Dec
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	Predicted GO
CC	GO:0005875	microtubule associated complex	IEP	Predicted GO
BP	GO:0006260	DNA replication	IEP	Predicted GO
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	Predicted GO
BP	GO:0016311	dephosphorylation	IEP	Predicted GO
CC	GO:0030286	dynein complex	IEP	Predicted GO
MF	GO:0043565	sequence-specific DNA binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR007083	RNA_pol_Rpb1_4	716	819
IPR000722	RNA_pol_asu	353	521
IPR007073	RNA_pol_Rpb1_7	1161	1295
IPR000684	RNA_pol_II_repeat_euk	1614	1627
IPR000684	RNA_pol_II_repeat_euk	1776	1788
IPR000684	RNA_pol_II_repeat_euk	1721	1734
IPR000684	RNA_pol_II_repeat_euk	1556	1569
IPR000684	RNA_pol_II_repeat_euk	1689	1701
IPR000684	RNA_pol_II_repeat_euk	1769	1782
IPR000684	RNA_pol_II_repeat_euk	1642	1655
IPR000684	RNA_pol_II_repeat_euk	1549	1560
IPR000684	RNA_pol_II_repeat_euk	1600	1613
IPR000684	RNA_pol_II_repeat_euk	1563	1574
IPR000684	RNA_pol_II_repeat_euk	1729	1741
IPR000684	RNA_pol_II_repeat_euk	1707	1720
IPR000684	RNA_pol_II_repeat_euk	1628	1640
IPR000684	RNA_pol_II_repeat_euk	1762	1775
IPR000684	RNA_pol_II_repeat_euk	1755	1768
IPR000684	RNA_pol_II_repeat_euk	1674	1687
IPR007066	RNA_pol_Rpb1_3	525	688
IPR007075	RNA_pol_Rpb1_6	892	1076
IPR007080	RNA_pol_Rpb1_1	14	351
IPR007081	RNA_pol_Rpb1_5	826	1416

External Links

No external refs found!

Brara.A00264.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation