Brara.A00385.1

Description : 4-hydroxy-3-methylbut-2-enyl diphosphate reductase

Gene families : OG_42_0004636 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004636_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.A00385.1
Cluster	HCAA Clusters: Cluster_86

Target	Alias	Description	ECC score	Gene Family Method
At4g34350	No alias	4-hydroxy-3-methylbut-2-enyl diphosphate reductase,...	0.07	Orthogroups_2024-Update
Bradi1g09710	No alias	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	0.04	Orthogroups_2024-Update
Cre08.g372950	No alias	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	0.03	Orthogroups_2024-Update
Glyma.11G120900	No alias	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	0.06	Orthogroups_2024-Update
Glyma.12G046000	No alias	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	0.03	Orthogroups_2024-Update
HORVU4Hr1G010410.4	No alias	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	0.04	Orthogroups_2024-Update
LOC_Os03g52170	No alias	4-hydroxy-3-methylbut-2-enyl diphosphate reductase,...	0.04	Orthogroups_2024-Update
Sopen01g051490	No alias	LytB protein	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006081	cellular aldehyde metabolic process	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006090	pyruvate metabolic process	None	Extended
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006644	phospholipid metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
BP	GO:0008654	phospholipid biosynthetic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009240	isopentenyl diphosphate biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016725	oxidoreductase activity, acting on CH or CH2 groups	None	Extended
MF	GO:0016726	oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor	None	Extended
BP	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	IEA	16Dec
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019682	glyceraldehyde-3-phosphate metabolic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046490	isopentenyl diphosphate metabolic process	None	Extended
MF	GO:0046872	metal ion binding	IEA	16Dec
BP	GO:0050992	dimethylallyl diphosphate biosynthetic process	IEA	16Dec
BP	GO:0050993	dimethylallyl diphosphate metabolic process	None	Extended
MF	GO:0051745	4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	IEA	16Dec
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004175	endopeptidase activity	IEP	Predicted GO
MF	GO:0004222	metalloendopeptidase activity	IEP	Predicted GO
CC	GO:0005886	plasma membrane	IEP	Predicted GO
BP	GO:0005985	sucrose metabolic process	IEP	Predicted GO
BP	GO:0005986	sucrose biosynthetic process	IEP	Predicted GO
MF	GO:0008237	metallopeptidase activity	IEP	Predicted GO
CC	GO:0009521	photosystem	IEP	Predicted GO
CC	GO:0009522	photosystem I	IEP	Predicted GO
CC	GO:0009538	photosystem I reaction center	IEP	Predicted GO
BP	GO:0015979	photosynthesis	IEP	Predicted GO
CC	GO:0016020	membrane	IEP	Predicted GO
MF	GO:0019203	carbohydrate phosphatase activity	IEP	Predicted GO
BP	GO:0030163	protein catabolic process	IEP	Predicted GO
MF	GO:0033743	peptide-methionine (R)-S-oxide reductase activity	IEP	Predicted GO
CC	GO:0044425	membrane part	IEP	Predicted GO
CC	GO:0044436	thylakoid part	IEP	Predicted GO
MF	GO:0050307	sucrose-phosphate phosphatase activity	IEP	Predicted GO
MF	GO:0050308	sugar-phosphatase activity	IEP	Predicted GO
BP	GO:0055085	transmembrane transport	IEP	Predicted GO
CC	GO:0098796	membrane protein complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003451	LytB/IspH	109	449

External Links

No external refs found!

Brara.A00385.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation