Brara.A00423.1

Description : component *(uS14) of small ribosomal-subunit (SSU) proteome

Gene families : OG_42_0002354 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002354_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.A00423.1
Cluster	HCAA Clusters: Cluster_8

Target	Alias	Description	ECC score	Gene Family Method
171412	No alias	Ribosomal protein S14p/S29e family protein	0.03	Orthogroups_2024-Update
Cre08.g358556	No alias	Ribosomal protein S14p/S29e family protein	0.1	Orthogroups_2024-Update
HORVU4Hr1G037800.1	No alias	component *(uS14) of small ribosomal-subunit (SSU) proteome	0.03	Orthogroups_2024-Update
HORVU5Hr1G098740.1	No alias	component *(uS14) of small ribosomal-subunit (SSU) proteome	0.02	Orthogroups_2024-Update
PSME_00033957-RA	No alias	(at4g33865 : 112.0) Ribosomal protein S14p/S29e family...	0.03	Orthogroups_2024-Update
PSME_00037160-RA	No alias	(at4g33865 : 113.0) Ribosomal protein S14p/S29e family...	0.02	Orthogroups_2024-Update
Pp1s58_94V6	No alias	40s ribosomal protein s29	0.06	Orthogroups_2024-Update
Pp1s79_7V6	No alias	40s ribosomal protein s29	0.06	Orthogroups_2024-Update
Sobic.008G108601.1	No alias	component *(uS14) of small ribosomal-subunit (SSU) proteome	0.05	Orthogroups_2024-Update
Solyc06g073430	No alias	Ribosomal protein S3 (AHRD V3.3 --* A0A0K1ZDA3_9SOLA)	0.04	Orthogroups_2024-Update
Solyc11g020890	No alias	40S ribosomal S29-like protein (AHRD V3.3 *** A0A0B0MKW3_GOSAR)	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
BP	GO:0006665	sphingolipid metabolic process	IEP	Predicted GO
BP	GO:0006672	ceramide metabolic process	IEP	Predicted GO
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predicted GO
CC	GO:0009521	photosystem	IEP	Predicted GO
CC	GO:0009523	photosystem II	IEP	Predicted GO
MF	GO:0010181	FMN binding	IEP	Predicted GO
BP	GO:0010206	photosystem II repair	IEP	Predicted GO
BP	GO:0010207	photosystem II assembly	IEP	Predicted GO
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	IEP	Predicted GO
BP	GO:0022607	cellular component assembly	IEP	Predicted GO
BP	GO:0030091	protein repair	IEP	Predicted GO
BP	GO:0034622	cellular protein-containing complex assembly	IEP	Predicted GO
BP	GO:0043933	protein-containing complex subunit organization	IEP	Predicted GO
CC	GO:0044436	thylakoid part	IEP	Predicted GO
BP	GO:0065003	protein-containing complex assembly	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001209	Ribosomal_S14	7	56

External Links

No external refs found!

Brara.A00423.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation