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  5. Brara.A00467.1

Brara.A00467.1


Description : substrate specificity component *(CDC20) of APC/C E3 ubiquitin ligase complex


Gene families : OG_42_0000946 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000946_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.A00467.1
Cluster HCAA Clusters: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
A4A49_23682 No alias cell division cycle 20.1, cofactor of apc complex 0.04 Orthogroups_2024-Update
At4g33260 No alias Cell division cycle 20.2, cofactor of APC complex... 0.12 Orthogroups_2024-Update
Cre09.g399911 No alias Transducin family protein / WD-40 repeat family protein 0.03 Orthogroups_2024-Update
GRMZM2G414613 No alias Transducin family protein / WD-40 repeat family protein 0.02 Orthogroups_2024-Update
Glyma.01G229600 No alias Transducin family protein / WD-40 repeat family protein 0.19 Orthogroups_2024-Update
Glyma.03G204700 No alias Transducin family protein / WD-40 repeat family protein 0.03 Orthogroups_2024-Update
Glyma.11G012400 No alias Transducin family protein / WD-40 repeat family protein 0.16 Orthogroups_2024-Update
Mp3g00030.1 No alias CDC20-type (APC/C)-dependent ubiquitination activator protein 0.02 Orthogroups_2024-Update
Potri.013G048900 No alias Transducin family protein / WD-40 repeat family protein 0.03 Orthogroups_2024-Update
Solyc03g096870 No alias cell division control 20-1 0.2 Orthogroups_2024-Update
Solyc06g072830 No alias WD40 repeat-containing protein (AHRD V3.3 *** A0A103YEC3_CYNCS) 0.26 Orthogroups_2024-Update
Solyc08g005420 No alias WD40 repeat-containing protein (AHRD V3.3 *** A0A103YEC3_CYNCS) 0.02 Orthogroups_2024-Update
Sopen06g029210 No alias WD domain, G-beta repeat 0.16 Orthogroups_2024-Update
evm.model.contig_2294.2 No alias (at4g33260 : 340.0) putative cdc20 protein (CDC20.2);... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006553 lysine metabolic process IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008837 diaminopimelate epimerase activity IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
BP GO:0009085 lysine biosynthetic process IEP Predicted GO
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0016854 racemase and epimerase activity IEP Predicted GO
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043648 dicarboxylic acid metabolic process IEP Predicted GO
BP GO:0046451 diaminopimelate metabolic process IEP Predicted GO
MF GO:0047661 amino-acid racemase activity IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 306 346
IPR001680 WD40_repeat 260 295
IPR001680 WD40_repeat 396 431
IPR024977 Apc4_WD40_dom 178 236
No external refs found!