1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.A00708.1

Brara.A00708.1


Description : regulatory E3 ubiquitin ligase targeted to IRT1 *(IDF1)


Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.A00708.1
Cluster HCAA Clusters: Cluster_225

Target Alias Description ECC score Gene Family Method Actions
8844 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
A4A49_30512 No alias ring-h2 finger protein atl54 0.04 Orthogroups_2024-Update
A4A49_37314 No alias e3 ubiquitin-protein ligase atl9 0.03 Orthogroups_2024-Update
A4A49_38971 No alias ring-h2 finger protein atl72 0.03 Orthogroups_2024-Update
Bradi2g22650 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g56160 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Brara.B03540.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.C01887.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.D02285.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.E01886.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Brara.F02551.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.G00998.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.H01760.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Brara.J02480.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Glyma.03G239900 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.06G015200 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.11G231400 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.11G242500 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os01g11460 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os01g11520 No alias RING-H2 finger protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os02g35329 No alias RING-H2 finger protein ATL3F, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os06g11450 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.04 Orthogroups_2024-Update
MA_12363g0010 No alias (at1g72310 : 126.0) Encodes a putative RING-H2 zinc... 0.04 Orthogroups_2024-Update
MA_569551g0010 No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
MA_611616g0010 No alias (at1g49230 : 125.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
MA_96368g0010 No alias (at5g17600 : 180.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
Potri.003G075200 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.005G255200 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Seita.1G203900.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Solyc01g066430 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT2G47560.1) 0.04 Orthogroups_2024-Update
Solyc01g088440 No alias RING/U-box superfamily protein, putative (AHRD V3.3 ***... 0.04 Orthogroups_2024-Update
Solyc02g082420 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT1G20823.1) 0.03 Orthogroups_2024-Update
Solyc09g010650 No alias RING/U-box superfamily protein (AHRD V3.3 *-* AT2G37580.1) 0.03 Orthogroups_2024-Update
Solyc10g081790 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT5G06490.1) 0.03 Orthogroups_2024-Update
Solyc11g005310 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT1G49230.1) 0.04 Orthogroups_2024-Update
Sopen01g035310 No alias Ring finger domain 0.03 Orthogroups_2024-Update
Sopen03g031440 No alias Ring finger domain 0.03 Orthogroups_2024-Update
Sopen03g034470 No alias Ring finger domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000724 double-strand break repair via homologous recombination IEP Predicted GO
BP GO:0000725 recombinational repair IEP Predicted GO
MF GO:0004312 fatty acid synthase activity IEP Predicted GO
BP GO:0005984 disaccharide metabolic process IEP Predicted GO
BP GO:0005991 trehalose metabolic process IEP Predicted GO
BP GO:0005992 trehalose biosynthetic process IEP Predicted GO
BP GO:0006302 double-strand break repair IEP Predicted GO
BP GO:0006310 DNA recombination IEP Predicted GO
BP GO:0009311 oligosaccharide metabolic process IEP Predicted GO
BP GO:0009312 oligosaccharide biosynthetic process IEP Predicted GO
MF GO:0009922 fatty acid elongase activity IEP Predicted GO
BP GO:0046351 disaccharide biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 116 159
No external refs found!