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  5. Brara.A00758.1

Brara.A00758.1


Description : component *(VIP3/SKI8) of PAF1C transcription initiation and elongation complex & component *(SKI8/VIP3) of SUPERKILLER regulation complex


Gene families : OG_42_0005303 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005303_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Brassica rapa: Brara.A00758.1
Cluster HCAA Clusters: Cluster_248

Target Alias Description ECC score Gene Family Method Actions
Glyma.13G107300 No alias Transducin/WD40 repeat-like superfamily protein 0.05 Orthogroups_2024-Update
evm.model.tig00020723.14 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
CC GO:0005839 proteasome core complex IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
CC GO:0016272 prefoldin complex IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
BP GO:0018208 peptidyl-proline modification IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
BP GO:0031123 RNA 3'-end processing IEP Predicted GO
BP GO:0031124 mRNA 3'-end processing IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
InterPro domains Description Start Stop
IPR024977 Apc4_WD40_dom 155 201
IPR001680 WD40_repeat 278 319
IPR001680 WD40_repeat 52 88
IPR001680 WD40_repeat 235 271
IPR001680 WD40_repeat 98 131
No external refs found!