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  5. Brara.A00840.1

Brara.A00840.1


Description : bHLH-type transcription factor


Gene families : OG_42_0000449 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000449_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.A00840.1
Cluster HCAA Clusters: Cluster_265

Target Alias Description ECC score Gene Family Method Actions
118904 No alias phytochrome interacting factor 3 0.02 Orthogroups_2024-Update
Potri.002G124400 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 Orthogroups_2024-Update
Potri.014G025800 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006308 DNA catabolic process IEP Predicted GO
BP GO:0006366 transcription by RNA polymerase II IEP Predicted GO
BP GO:0009452 7-methylguanosine RNA capping IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0036260 RNA capping IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR011598 bHLH_dom 230 277
No external refs found!