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  5. Brara.A00900.1

Brara.A00900.1


Description : Qa-type SYP2-group component of SNARE membrane fusion complex


Gene families : OG_42_0001528 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001528_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.A00900.1
Cluster HCAA Clusters: Cluster_117

Target Alias Description ECC score Gene Family Method Actions
121392 No alias Syntaxin/t-SNARE family protein 0.01 Orthogroups_2024-Update
At1g32270 No alias Putative syntaxin-24 [Source:UniProtKB/Swiss-Prot;Acc:Q9C615] 0.02 Orthogroups_2024-Update
At4g17730 No alias AT4G17730 protein [Source:UniProtKB/TrEMBL;Acc:A8MS65] 0.03 Orthogroups_2024-Update
At5g16830 No alias Syntaxin-21 [Source:UniProtKB/Swiss-Prot;Acc:Q39233] 0.04 Orthogroups_2024-Update
Cre01.g010700 No alias Syntaxin/t-SNARE family protein 0.02 Orthogroups_2024-Update
Seita.1G287900.1 No alias Qa-type SYP2-group component of SNARE membrane fusion complex 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0005681 spliceosomal complex IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
BP GO:0006012 galactose metabolic process IEP Predicted GO
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
MF GO:0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity IEP Predicted GO
BP GO:0010035 response to inorganic substance IEP Predicted GO
BP GO:0010038 response to metal ion IEP Predicted GO
MF GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEP Predicted GO
MF GO:0015020 glucuronosyltransferase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016157 sucrose synthase activity IEP Predicted GO
MF GO:0016409 palmitoyltransferase activity IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016746 transferase activity, transferring acyl groups IEP Predicted GO
MF GO:0016790 thiolester hydrolase activity IEP Predicted GO
CC GO:0031082 BLOC complex IEP Predicted GO
CC GO:0031083 BLOC-1 complex IEP Predicted GO
CC GO:0044445 cytosolic part IEP Predicted GO
MF GO:0070569 uridylyltransferase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR006011 Syntaxin_N 186 218
IPR000727 T_SNARE_dom 219 271
IPR006011 Syntaxin_N 33 132
No external refs found!