Description : RNA editing factor *(DOT4)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Brassica rapa: Brara.A00983.1 | |
Cluster | HCAA Clusters: Cluster_114 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
101455 | No alias | mitochondrial editing factor 22 | 0.02 | Orthogroups_2024-Update | |
109721 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
180422 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
At3g29230 | No alias | Pentatricopeptide repeat-containing protein At3g29230... | 0.03 | Orthogroups_2024-Update | |
At3g47530 | No alias | Pentatricopeptide repeat-containing protein At3g47530... | 0.03 | Orthogroups_2024-Update | |
Bradi1g01970 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
Bradi1g05610 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Bradi2g62320 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.05 | Orthogroups_2024-Update | |
Bradi3g45620 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
Bradi3g51740 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
Bradi4g15307 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Bradi5g12970 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Brara.A02193.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
Brara.C02021.1 | No alias | Unknown function | 0.06 | Orthogroups_2024-Update | |
Brara.I02594.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Glyma.01G228000 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.05G240300 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
Glyma.12G183600 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.13G313200 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
HORVU2Hr1G028520.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
HORVU2Hr1G035330.2 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
HORVU3Hr1G080630.6 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
HORVU5Hr1G047250.4 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
HORVU6Hr1G079830.1 | No alias | RNA editing factor *(CLB19) | 0.03 | Orthogroups_2024-Update | |
LOC_Os02g26940 | No alias | vegetative storage protein, putative, expressed | 0.03 | Orthogroups_2024-Update | |
Seita.3G137300.1 | No alias | RNA editing factor *(ECB2/VAC1) | 0.03 | Orthogroups_2024-Update | |
Seita.5G065900.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.5G460300.1 | No alias | RNA editing factor *(OTP72) | 0.03 | Orthogroups_2024-Update | |
Seita.9G339400.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Sobic.002G065200.1 | No alias | RNA editing factor *(CRR28) | 0.03 | Orthogroups_2024-Update | |
Sobic.003G109000.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.009G241200.3 | No alias | RNA editing factor *(ECB2/VAC1) | 0.02 | Orthogroups_2024-Update | |
Solyc01g098150 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
Solyc11g008940 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.02 | Orthogroups_2024-Update | |
Sopen02g024180 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
Sopen11g004720 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | 16Dec |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000151 | ubiquitin ligase complex | IEP | Predicted GO |
CC | GO:0000152 | nuclear ubiquitin ligase complex | IEP | Predicted GO |
BP | GO:0001522 | pseudouridine synthesis | IEP | Predicted GO |
MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
MF | GO:0003697 | single-stranded DNA binding | IEP | Predicted GO |
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0003735 | structural constituent of ribosome | IEP | Predicted GO |
MF | GO:0003743 | translation initiation factor activity | IEP | Predicted GO |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Predicted GO |
MF | GO:0005198 | structural molecule activity | IEP | Predicted GO |
CC | GO:0005680 | anaphase-promoting complex | IEP | Predicted GO |
CC | GO:0005840 | ribosome | IEP | Predicted GO |
CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEP | Predicted GO |
BP | GO:0006412 | translation | IEP | Predicted GO |
BP | GO:0006413 | translational initiation | IEP | Predicted GO |
BP | GO:0006518 | peptide metabolic process | IEP | Predicted GO |
MF | GO:0008135 | translation factor activity, RNA binding | IEP | Predicted GO |
BP | GO:0009059 | macromolecule biosynthetic process | IEP | Predicted GO |
BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
MF | GO:0019843 | rRNA binding | IEP | Predicted GO |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Predicted GO |
CC | GO:0031461 | cullin-RING ubiquitin ligase complex | IEP | Predicted GO |
CC | GO:0032991 | protein-containing complex | IEP | Predicted GO |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Predicted GO |
BP | GO:0042254 | ribosome biogenesis | IEP | Predicted GO |
BP | GO:0043043 | peptide biosynthetic process | IEP | Predicted GO |
CC | GO:0043228 | non-membrane-bounded organelle | IEP | Predicted GO |
CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Predicted GO |
BP | GO:0043603 | cellular amide metabolic process | IEP | Predicted GO |
BP | GO:0043604 | amide biosynthetic process | IEP | Predicted GO |
BP | GO:0044085 | cellular component biogenesis | IEP | Predicted GO |
BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Predicted GO |
CC | GO:0044424 | intracellular part | IEP | Predicted GO |
CC | GO:0044444 | cytoplasmic part | IEP | Predicted GO |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
CC | GO:1990904 | ribonucleoprotein complex | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 256 | 304 |
IPR002885 | Pentatricopeptide_repeat | 160 | 202 |
IPR002885 | Pentatricopeptide_repeat | 561 | 608 |
IPR002885 | Pentatricopeptide_repeat | 358 | 407 |
IPR032867 | DYW_dom | 777 | 869 |
IPR002885 | Pentatricopeptide_repeat | 331 | 357 |
IPR002885 | Pentatricopeptide_repeat | 434 | 460 |
IPR002885 | Pentatricopeptide_repeat | 462 | 490 |
No external refs found! |