1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.A00997.1

Brara.A00997.1


Description : HSF-type transcription factor


Gene families : OG_42_0000092 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.A00997.1
Cluster HCAA Clusters: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
93081 No alias heat shock transcription factor A1D 0.03 Orthogroups_2024-Update
A4A49_02892 No alias heat stress transcription factor c-1 0.04 Orthogroups_2024-Update
A4A49_05282 No alias heat stress transcription factor a-8 0.02 Orthogroups_2024-Update
At4g36990 No alias Heat stress transcription factor B-1... 0.04 Orthogroups_2024-Update
At5g54070 No alias Heat stress transcription factor A-9... 0.04 Orthogroups_2024-Update
Brara.C04390.1 No alias HSF-type transcription factor 0.03 Orthogroups_2024-Update
Brara.I01903.1 No alias HSF-type transcription factor 0.03 Orthogroups_2024-Update
Brara.I02304.1 No alias HSF-type transcription factor 0.04 Orthogroups_2024-Update
Glyma.01G185800 No alias heat shock factor 4 0.04 Orthogroups_2024-Update
Glyma.09G143200 No alias heat shock transcription factor B2A 0.04 Orthogroups_2024-Update
Glyma.14G036200 No alias heat shock transcription factor B4 0.04 Orthogroups_2024-Update
Glyma.14G096800 No alias heat shock transcription factor A2 0.04 Orthogroups_2024-Update
LOC_Os02g13800 No alias HSF-type DNA-binding domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os03g06630 No alias heat stress transcription factor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g28200 No alias HSF-type DNA-binding domain containing protein, expressed 0.02 Orthogroups_2024-Update
MA_8992661g0010 No alias (at1g46264 : 182.0) Encodes SCHIZORIZA, a member of Heat... 0.03 Orthogroups_2024-Update
PSME_00016852-RA No alias (at1g46264 : 151.0) Encodes SCHIZORIZA, a member of Heat... 0.03 Orthogroups_2024-Update
PSME_00055440-RA No alias (at3g22830 : 268.0) member of Heat Stress Transcription... 0.02 Orthogroups_2024-Update
Potri.011G071700 No alias heat shock transcription factor A4A 0.04 Orthogroups_2024-Update
Pp1s19_153V6 No alias heat shock transcription factor 0.02 Orthogroups_2024-Update
Seita.2G229700.1 No alias HSF-type transcription factor 0.02 Orthogroups_2024-Update
Seita.4G238100.1 No alias HSF-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.001G057700.1 No alias HSF-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.002G225300.1 No alias HSF-type transcription factor 0.03 Orthogroups_2024-Update
Sopen07g029070 No alias HSF-type DNA-binding 0.04 Orthogroups_2024-Update
Sopen08g018510 No alias HSF-type DNA-binding 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA 16Dec
BP GO:0006355 regulation of transcription, DNA-templated IEA 16Dec
MF GO:0043565 sequence-specific DNA binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Predicted GO
MF GO:0004133 glycogen debranching enzyme activity IEP Predicted GO
MF GO:0004134 4-alpha-glucanotransferase activity IEP Predicted GO
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004252 serine-type endopeptidase activity IEP Predicted GO
MF GO:0004506 squalene monooxygenase activity IEP Predicted GO
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Predicted GO
MF GO:0010333 terpene synthase activity IEP Predicted GO
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Predicted GO
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
CC GO:0031012 extracellular matrix IEP Predicted GO
MF GO:0032182 ubiquitin-like protein binding IEP Predicted GO
MF GO:0043130 ubiquitin binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
CC GO:0044421 extracellular region part IEP Predicted GO
MF GO:2001070 starch binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000232 HSF_DNA-bd 16 105
No external refs found!