1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.A01011.1

Brara.A01011.1


Description : DNA chromomethylase *(CMT)


Gene families : OG_42_0002722 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002722_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.A01011.1
Cluster HCAA Clusters: Cluster_160

Target Alias Description ECC score Gene Family Method Actions
Sopen08g001440 No alias C-5 cytosine-specific DNA methylase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA 16Dec
MF GO:0008168 methyltransferase activity IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0002161 aminoacyl-tRNA editing activity IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003729 mRNA binding IEP Predicted GO
CC GO:0005685 U1 snRNP IEP Predicted GO
BP GO:0006376 mRNA splice site selection IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006694 steroid biosynthetic process IEP Predicted GO
BP GO:0006729 tetrahydrobiopterin biosynthetic process IEP Predicted GO
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Predicted GO
MF GO:0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
BP GO:0008202 steroid metabolic process IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
CC GO:0017119 Golgi transport complex IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
BP GO:0034311 diol metabolic process IEP Predicted GO
BP GO:0034312 diol biosynthetic process IEP Predicted GO
CC GO:0035145 exon-exon junction complex IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
BP GO:0042558 pteridine-containing compound metabolic process IEP Predicted GO
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
BP GO:0046146 tetrahydrobiopterin metabolic process IEP Predicted GO
BP GO:0046165 alcohol biosynthetic process IEP Predicted GO
BP GO:0046173 polyol biosynthetic process IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR023780 Chromo_domain 678 732
IPR001525 C5_MeTfrase 743 1103
IPR001025 BAH_dom 421 526
No external refs found!