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  5. Brara.A01111.1

Brara.A01111.1


Description : regulatory protein *(LSD/LOL) of programmed cell death


Gene families : OG_42_0001639 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001639_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.A01111.1
Cluster HCAA Clusters: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
At4g20380 No alias LSD1 zinc finger family protein... 0.07 Orthogroups_2024-Update
Glyma.17G154800 No alias lsd one like 1 0.02 Orthogroups_2024-Update
LOC_Os07g28910 No alias LSD1 zinc finger domain containing protein, expressed 0.03 Orthogroups_2024-Update
Sobic.007G028700.3 No alias regulatory protein *(LSD/LOL) of programmed cell death 0.04 Orthogroups_2024-Update
Sobic.007G050100.1 No alias regulatory protein *(LSD/LOL) of programmed cell death 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004860 protein kinase inhibitor activity IEP Predicted GO
MF GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006354 DNA-templated transcription, elongation IEP Predicted GO
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Predicted GO
CC GO:0008023 transcription elongation factor complex IEP Predicted GO
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Predicted GO
MF GO:0019210 kinase inhibitor activity IEP Predicted GO
MF GO:0030291 protein serine/threonine kinase inhibitor activity IEP Predicted GO
MF GO:0032182 ubiquitin-like protein binding IEP Predicted GO
BP GO:0040008 regulation of growth IEP Predicted GO
MF GO:0043130 ubiquitin binding IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0045927 positive regulation of growth IEP Predicted GO
MF GO:0051287 NAD binding IEP Predicted GO
CC GO:0070449 elongin complex IEP Predicted GO
InterPro domains Description Start Stop
IPR005735 Znf_LSD1 57 81
IPR005735 Znf_LSD1 7 31
IPR005735 Znf_LSD1 98 122
No external refs found!