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Description : RNA editing factor *(DEK36)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Brassica rapa: Brara.A01167.1 | |
| Cluster | HCAA Clusters: Cluster_147 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| At1g17630 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | Orthogroups_2024-Update | |
| Bradi1g20230 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Bradi3g32220 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Brara.H00716.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Brara.H02105.1 | No alias | RNA editing factor *(OTP90) | 0.03 | Orthogroups_2024-Update | |
| Brara.J00787.1 | No alias | RNA editing factor *(MEF1) | 0.04 | Orthogroups_2024-Update | |
| GRMZM2G020008 | No alias | mitochondrial RNAediting factor 1 | 0.02 | Orthogroups_2024-Update | |
| GRMZM2G331779 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Glyma.02G144100 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.02G160400 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.07G127400 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.09G168800 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| HORVU0Hr1G015970.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| LOC_Os01g46230 | No alias | tetratricopeptide-like helical, putative, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os02g53050 | No alias | tetratricopeptide-like helical, putative, expressed | 0.03 | Orthogroups_2024-Update | |
| LOC_Os03g64370 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os04g53630 | No alias | pentatricopeptide, putative, expressed | 0.03 | Orthogroups_2024-Update | |
| LOC_Os07g39910 | No alias | pentatricopeptide repeat domain containing protein,... | 0.03 | Orthogroups_2024-Update | |
| LOC_Os12g08140 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
| MA_291996g0010 | No alias | (at1g11290 : 549.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
| PSME_00011574-RA | No alias | (at1g16480 : 646.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
| PSME_00030185-RA | No alias | (at3g57430 : 680.0) Encodes a chloroplast RNA editing... | 0.03 | Orthogroups_2024-Update | |
| PSME_00037812-RA | No alias | (at4g13650 : 600.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
| PSME_00056680-RA | No alias | (at2g22070 : 511.0) pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
| PSME_00057046-RA | No alias | (at4g18750 : 592.0) Encodes a pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
| Potri.012G108000 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.013G006700 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Seita.2G293300.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sopen00g008750 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
| Sopen07g001950 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update | |
| Sopen12g032340 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000159 | protein phosphatase type 2A complex | IEP | Predicted GO |
| MF | GO:0003993 | acid phosphatase activity | IEP | Predicted GO |
| CC | GO:0008287 | protein serine/threonine phosphatase complex | IEP | Predicted GO |
| MF | GO:0019208 | phosphatase regulator activity | IEP | Predicted GO |
| MF | GO:0019888 | protein phosphatase regulator activity | IEP | Predicted GO |
| CC | GO:1903293 | phosphatase complex | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 269 | 293 |
| IPR002885 | Pentatricopeptide_repeat | 471 | 497 |
| IPR002885 | Pentatricopeptide_repeat | 499 | 529 |
| IPR002885 | Pentatricopeptide_repeat | 598 | 648 |
| IPR002885 | Pentatricopeptide_repeat | 97 | 139 |
| IPR002885 | Pentatricopeptide_repeat | 194 | 241 |
| IPR002885 | Pentatricopeptide_repeat | 396 | 436 |
| IPR002885 | Pentatricopeptide_repeat | 295 | 338 |
| No external refs found! |