1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.A01196.1

Brara.A01196.1


Description : component *(SF3B2) of splicing factor 3B complex


Gene families : OG_42_0003742 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003742_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.A01196.1
Cluster HCAA Clusters: Cluster_162

Target Alias Description ECC score Gene Family Method Actions
MA_88936g0020 No alias (at4g21660 : 177.0) proline-rich spliceosome-associated... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004857 enzyme inhibitor activity IEP Predicted GO
MF GO:0004869 cysteine-type endopeptidase inhibitor activity IEP Predicted GO
MF GO:0005546 phosphatidylinositol-4,5-bisphosphate binding IEP Predicted GO
BP GO:0006488 dolichol-linked oligosaccharide biosynthetic process IEP Predicted GO
BP GO:0006490 oligosaccharide-lipid intermediate biosynthetic process IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
MF GO:0032182 ubiquitin-like protein binding IEP Predicted GO
CC GO:0042765 GPI-anchor transamidase complex IEP Predicted GO
MF GO:0043130 ubiquitin binding IEP Predicted GO
MF GO:1902936 phosphatidylinositol bisphosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR007180 DUF382 172 297
IPR006568 PSP_pro-rich 306 351
No external refs found!