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  5. Brara.A01281.1

Brara.A01281.1


Description : Unknown function


Gene families : OG_42_0002530 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002530_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.A01281.1
Cluster HCAA Clusters: Cluster_282

Target Alias Description ECC score Gene Family Method Actions
Solyc05g009400 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0004089 carbonate dehydratase activity IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006694 steroid biosynthetic process IEP Predicted GO
BP GO:0008202 steroid metabolic process IEP Predicted GO
BP GO:0016125 sterol metabolic process IEP Predicted GO
BP GO:0016126 sterol biosynthetic process IEP Predicted GO
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Predicted GO
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Predicted GO
MF GO:0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016829 lyase activity IEP Predicted GO
MF GO:0016836 hydro-lyase activity IEP Predicted GO
MF GO:0016840 carbon-nitrogen lyase activity IEP Predicted GO
MF GO:0016843 amine-lyase activity IEP Predicted GO
MF GO:0016844 strictosidine synthase activity IEP Predicted GO
MF GO:0016972 thiol oxidase activity IEP Predicted GO
BP GO:1901615 organic hydroxy compound metabolic process IEP Predicted GO
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 148 172
IPR002885 Pentatricopeptide_repeat 299 326
IPR002885 Pentatricopeptide_repeat 205 231
IPR002885 Pentatricopeptide_repeat 236 264
IPR002885 Pentatricopeptide_repeat 269 295
IPR002885 Pentatricopeptide_repeat 174 202
IPR002885 Pentatricopeptide_repeat 474 499
IPR002885 Pentatricopeptide_repeat 73 103
IPR002885 Pentatricopeptide_repeat 375 397
IPR002885 Pentatricopeptide_repeat 400 448
No external refs found!