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  5. Brara.A01345.1

Brara.A01345.1


Description : E3 ubiquitin ligase *(AIRP1)


Gene families : OG_42_0000832 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000832_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.A01345.1
Cluster HCAA Clusters: Cluster_331

Target Alias Description ECC score Gene Family Method Actions
Brara.C00693.1 No alias E3 ubiquitin ligase *(AIRP1) 0.03 Orthogroups_2024-Update
Brara.C04683.1 No alias E3 ubiquitin ligase *(AIRP1) 0.03 Orthogroups_2024-Update
Brara.E03585.1 No alias E3 ubiquitin ligase *(AIRP1) 0.03 Orthogroups_2024-Update
Glyma.01G221000 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.09G257100 No alias RING-H2 finger B1A 0.04 Orthogroups_2024-Update
HORVU4Hr1G030950.7 No alias E3 ubiquitin ligase *(AIRP1) 0.03 Orthogroups_2024-Update
Pp1s455_5V6 No alias zinc finger (c3hc4-type ring finger) family protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Predicted GO
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003972 RNA ligase (ATP) activity IEP Predicted GO
MF GO:0005546 phosphatidylinositol-4,5-bisphosphate binding IEP Predicted GO
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Predicted GO
BP GO:0006887 exocytosis IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
MF GO:0008452 RNA ligase activity IEP Predicted GO
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Predicted GO
CC GO:0031012 extracellular matrix IEP Predicted GO
BP GO:0032940 secretion by cell IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
CC GO:0044421 extracellular region part IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
BP GO:0046903 secretion IEP Predicted GO
MF GO:1901981 phosphatidylinositol phosphate binding IEP Predicted GO
MF GO:1902936 phosphatidylinositol bisphosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 117 159
No external refs found!