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Description : component *(eL8) of large ribosomal-subunit (LSU) proteome
Gene families : OG_42_0001648 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001648_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Brassica rapa: Brara.A01492.1 | |
| Cluster | HCAA Clusters: Cluster_24 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 270545 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.03 | Orthogroups_2024-Update | |
| A4A49_61918 | No alias | 60s ribosomal protein l7a-2 | 0.07 | Orthogroups_2024-Update | |
| At2g47610 | No alias | 60S ribosomal protein L7a-1... | 0.03 | Orthogroups_2024-Update | |
| Bradi4g34750 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.04 | Orthogroups_2024-Update | |
| Bradi5g24680 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.05 | Orthogroups_2024-Update | |
| Brara.C02368.1 | No alias | component *(eL8) of large ribosomal-subunit (LSU) proteome | 0.04 | Orthogroups_2024-Update | |
| Brara.E00034.1 | No alias | component *(eL8) of large ribosomal-subunit (LSU) proteome | 0.03 | Orthogroups_2024-Update | |
| Brara.G01985.1 | No alias | component *(eL8) of large ribosomal-subunit (LSU) proteome | 0.04 | Orthogroups_2024-Update | |
| Cre12.g529651 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.05 | Orthogroups_2024-Update | |
| GRMZM2G178968 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.03 | Orthogroups_2024-Update | |
| GRMZM5G870752 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.02G002800 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.10G006200 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.06 | Orthogroups_2024-Update | |
| Glyma.11G103700 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.03 | Orthogroups_2024-Update | |
| MA_109678g0010 | No alias | (p35685|rl7a_orysa : 335.0) 60S ribosomal protein L7a -... | 0.03 | Orthogroups_2024-Update | |
| Pp1s149_30V6 | No alias | 60s ribosomal protein l7a | 0.03 | Orthogroups_2024-Update | |
| Pp1s149_35V6 | No alias | 60s ribosomal protein l7a | 0.03 | Orthogroups_2024-Update | |
| Pp1s211_31V6 | No alias | 60s ribosomal protein l7a | 0.04 | Orthogroups_2024-Update | |
| Pp1s37_339V6 | No alias | 60s ribosomal protein l7a | 0.03 | Orthogroups_2024-Update | |
| Pp1s90_23V6 | No alias | 60s ribosomal protein l7a | 0.03 | Orthogroups_2024-Update | |
| Seita.2G267400.1 | No alias | component *(eL8) of large ribosomal-subunit (LSU) proteome | 0.04 | Orthogroups_2024-Update | |
| Seita.4G177300.1 | No alias | component *(eL8) of large ribosomal-subunit (LSU) proteome | 0.03 | Orthogroups_2024-Update | |
| Seita.6G224900.1 | No alias | component *(eL8) of large ribosomal-subunit (LSU) proteome | 0.04 | Orthogroups_2024-Update | |
| Sobic.002G258800.1 | No alias | component *(eL8) of large ribosomal-subunit (LSU) proteome | 0.05 | Orthogroups_2024-Update | |
| Sobic.002G259000.1 | No alias | component *(eL8) of large ribosomal-subunit (LSU) proteome | 0.06 | Orthogroups_2024-Update | |
| Solyc01g097760 | No alias | 60S ribosomal protein L7A-like protein (AHRD V3.3 ***... | 0.04 | Orthogroups_2024-Update | |
| Solyc06g064470 | No alias | 60S ribosomal protein L7A-like protein (AHRD V3.3 ***... | 0.04 | Orthogroups_2024-Update | |
| Sopen01g041360 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | 0.06 | Orthogroups_2024-Update | |
| Sopen06g015510 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | 0.03 | Orthogroups_2024-Update | |
| Sopen06g022940 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | 0.03 | Orthogroups_2024-Update | |
| evm.model.contig_3485.8 | No alias | (p35685|rl7a_orysa : 308.0) 60S ribosomal protein L7a -... | 0.05 | Orthogroups_2024-Update | |
| evm.model.tig00000128.22 | No alias | (p35685|rl7a_orysa : 240.0) 60S ribosomal protein L7a -... | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | Predicted GO |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Predicted GO |
| MF | GO:0004478 | methionine adenosyltransferase activity | IEP | Predicted GO |
| MF | GO:0004748 | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor | IEP | Predicted GO |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Predicted GO |
| MF | GO:0005198 | structural molecule activity | IEP | Predicted GO |
| MF | GO:0005488 | binding | IEP | Predicted GO |
| MF | GO:0005524 | ATP binding | IEP | Predicted GO |
| CC | GO:0005840 | ribosome | IEP | Predicted GO |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0006260 | DNA replication | IEP | Predicted GO |
| BP | GO:0006399 | tRNA metabolic process | IEP | Predicted GO |
| BP | GO:0006412 | translation | IEP | Predicted GO |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Predicted GO |
| BP | GO:0006518 | peptide metabolic process | IEP | Predicted GO |
| BP | GO:0006520 | cellular amino acid metabolic process | IEP | Predicted GO |
| BP | GO:0006556 | S-adenosylmethionine biosynthetic process | IEP | Predicted GO |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predicted GO |
| MF | GO:0008144 | drug binding | IEP | Predicted GO |
| MF | GO:0008173 | RNA methyltransferase activity | IEP | Predicted GO |
| BP | GO:0009058 | biosynthetic process | IEP | Predicted GO |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
| MF | GO:0016725 | oxidoreductase activity, acting on CH or CH2 groups | IEP | Predicted GO |
| MF | GO:0016728 | oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor | IEP | Predicted GO |
| MF | GO:0016874 | ligase activity | IEP | Predicted GO |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Predicted GO |
| MF | GO:0017076 | purine nucleotide binding | IEP | Predicted GO |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Predicted GO |
| MF | GO:0031267 | small GTPase binding | IEP | Predicted GO |
| BP | GO:0032392 | DNA geometric change | IEP | Predicted GO |
| BP | GO:0032508 | DNA duplex unwinding | IEP | Predicted GO |
| MF | GO:0032553 | ribonucleotide binding | IEP | Predicted GO |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Predicted GO |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Predicted GO |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Predicted GO |
| MF | GO:0036094 | small molecule binding | IEP | Predicted GO |
| MF | GO:0043015 | gamma-tubulin binding | IEP | Predicted GO |
| BP | GO:0043038 | amino acid activation | IEP | Predicted GO |
| BP | GO:0043039 | tRNA aminoacylation | IEP | Predicted GO |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Predicted GO |
| MF | GO:0043168 | anion binding | IEP | Predicted GO |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Predicted GO |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Predicted GO |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Predicted GO |
| BP | GO:0043604 | amide biosynthetic process | IEP | Predicted GO |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Predicted GO |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Predicted GO |
| BP | GO:0044272 | sulfur compound biosynthetic process | IEP | Predicted GO |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Predicted GO |
| BP | GO:0046500 | S-adenosylmethionine metabolic process | IEP | Predicted GO |
| MF | GO:0061731 | ribonucleoside-diphosphate reductase activity | IEP | Predicted GO |
| BP | GO:0071103 | DNA conformation change | IEP | Predicted GO |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Predicted GO |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Predicted GO |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Predicted GO |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Predicted GO |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Predicted GO |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predicted GO |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Predicted GO |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Predicted GO |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR004038 | Ribosomal_L7Ae/L30e/S12e/Gad45 | 113 | 203 |
| No external refs found! |