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  5. Brara.A01798.1

Brara.A01798.1


Description : beta-class expansin


Gene families : OG_42_0000145 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000145_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.A01798.1
Cluster HCAA Clusters: Cluster_134

Target Alias Description ECC score Gene Family Method Actions
At2g20750 No alias Expansin-B1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU2] 0.05 Orthogroups_2024-Update
At4g28250 No alias EXPB3 [Source:UniProtKB/TrEMBL;Acc:A0A178USU9] 0.03 Orthogroups_2024-Update
Brara.K00035.1 No alias beta-class expansin 0.04 Orthogroups_2024-Update
GRMZM2G059785 No alias expansin B2 0.03 Orthogroups_2024-Update
HORVU4Hr1G088080.4 No alias Unknown function 0.02 Orthogroups_2024-Update
PSME_00009595-RA No alias (q7x6j9|exb17_orysa : 96.7) Expansin-B17 precursor... 0.03 Orthogroups_2024-Update
PSME_00020732-RA No alias (q7x6j9|exb17_orysa : 285.0) Expansin-B17 precursor... 0.02 Orthogroups_2024-Update
Potri.019G101900 No alias expansin B3 0.03 Orthogroups_2024-Update
Pp1s251_59V6 No alias beta-expansin 3 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004392 heme oxygenase (decyclizing) activity IEP Predicted GO
MF GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006098 pentose-phosphate shunt IEP Predicted GO
BP GO:0006739 NADP metabolic process IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006788 heme oxidation IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
BP GO:0016226 iron-sulfur cluster assembly IEP Predicted GO
CC GO:0016469 proton-transporting two-sector ATPase complex IEP Predicted GO
CC GO:0016471 vacuolar proton-transporting V-type ATPase complex IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
BP GO:0031163 metallo-sulfur cluster assembly IEP Predicted GO
CC GO:0033176 proton-transporting V-type ATPase complex IEP Predicted GO
BP GO:0042168 heme metabolic process IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
CC GO:0044437 vacuolar part IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
BP GO:0051156 glucose 6-phosphate metabolic process IEP Predicted GO
BP GO:0051186 cofactor metabolic process IEP Predicted GO
MF GO:0051213 dioxygenase activity IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
MF GO:2001070 starch binding IEP Predicted GO
InterPro domains Description Start Stop
IPR009009 RlpA-like_DPBB 75 153
IPR007117 Expansin_CBD 165 246
No external refs found!