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  5. Brara.A01840.1

Brara.A01840.1


Description : non-proteolytic core component *(ClpR) of chloroplast Clp-type protease complex


Gene families : OG_42_0002113 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002113_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.A01840.1
Cluster HCAA Clusters: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
Bradi1g62720 No alias ATP-dependent caseinolytic (Clp) protease/crotonase... 0.05 Orthogroups_2024-Update
Bradi2g10278 No alias CLP protease R subunit 4 0.06 Orthogroups_2024-Update
Cre03.g204350 No alias CLP protease R subunit 4 0.02 Orthogroups_2024-Update
Cre07.g331500 No alias ATP-dependent caseinolytic (Clp) protease/crotonase... 0.02 Orthogroups_2024-Update
Glyma.03G235800 No alias ATP-dependent caseinolytic (Clp) protease/crotonase... 0.04 Orthogroups_2024-Update
Glyma.05G065900 No alias CLP protease R subunit 4 0.05 Orthogroups_2024-Update
LOC_Os03g22430 No alias OsClp5 - Putative Clp protease homologue, expressed 0.02 Orthogroups_2024-Update
Mp7g03170.1 No alias non-proteolytic core component ClpR of chloroplast... 0.03 Orthogroups_2024-Update
Pp1s217_29V6 No alias atp-dependent clp protease proteolytic subunit 0.03 Orthogroups_2024-Update
Seita.5G044900.1 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.05 Orthogroups_2024-Update
Seita.9G407400.1 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.05 Orthogroups_2024-Update
Sobic.001G375000.2 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.04 Orthogroups_2024-Update
Sobic.003G128400.1 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.04 Orthogroups_2024-Update
Solyc01g099690 No alias ATP-dependent Clp protease proteolytic subunit (AHRD... 0.05 Orthogroups_2024-Update
Solyc08g077890 No alias ATP-dependent Clp protease proteolytic subunit (AHRD... 0.05 Orthogroups_2024-Update
Sopen08g026400 No alias Clp protease 0.04 Orthogroups_2024-Update
evm.model.tig00020952.49 No alias (at4g17040 : 138.0) CLP protease R subunit 4 (CLPR4);... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Predicted GO
MF GO:0004525 ribonuclease III activity IEP Predicted GO
MF GO:0004721 phosphoprotein phosphatase activity IEP Predicted GO
MF GO:0004725 protein tyrosine phosphatase activity IEP Predicted GO
MF GO:0004751 ribose-5-phosphate isomerase activity IEP Predicted GO
MF GO:0004797 thymidine kinase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0004813 alanine-tRNA ligase activity IEP Predicted GO
MF GO:0004827 proline-tRNA ligase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006419 alanyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006433 prolyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006470 protein dephosphorylation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016311 dephosphorylation IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016860 intramolecular oxidoreductase activity IEP Predicted GO
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0019136 deoxynucleoside kinase activity IEP Predicted GO
MF GO:0019205 nucleobase-containing compound kinase activity IEP Predicted GO
MF GO:0019206 nucleoside kinase activity IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
BP GO:0044281 small molecule metabolic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0070567 cytidylyltransferase activity IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR023562 ClpP/TepA 105 286
No external refs found!