Brara.A01842.1

Description : component *(TFB2) of multifunctional TFIIh complex & component *(TFB2) of TFIIh basal transcription factor complex

Gene families : OG_42_0005910 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005910_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.A01842.1
Cluster	HCAA Clusters: Cluster_329

Target	Alias	Description	ECC score	Gene Family Method	Actions
Bradi1g30300	No alias	transcription factor-related	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
CC	GO:0000439	transcription factor TFIIH core complex	IEA	16Dec
MF	GO:0001671	ATPase activator activity	IEA	16Dec
MF	GO:0003674	molecular_function	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005667	transcription factor complex	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006289	nucleotide-excision repair	IEA	16Dec
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
MF	GO:0008047	enzyme activator activity	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0030234	enzyme regulator activity	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044428	nuclear part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
CC	GO:0044798	nuclear transcription factor complex	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
MF	GO:0060589	nucleoside-triphosphatase regulator activity	None	Extended
MF	GO:0060590	ATPase regulator activity	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0090575	RNA polymerase II transcription factor complex	None	Extended
MF	GO:0098772	molecular function regulator	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000272	polysaccharide catabolic process	IEP	Predicted GO
BP	GO:0005976	polysaccharide metabolic process	IEP	Predicted GO
BP	GO:0007165	signal transduction	IEP	Predicted GO
BP	GO:0009057	macromolecule catabolic process	IEP	Predicted GO
BP	GO:0016052	carbohydrate catabolic process	IEP	Predicted GO
MF	GO:0016160	amylase activity	IEP	Predicted GO
MF	GO:0016161	beta-amylase activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR004598	TFIIH_p52/Tfb2	15	366

External Links

No external refs found!

Brara.A01842.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation