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  5. Brara.A01985.1

Brara.A01985.1


Description : SSU processome assembly factor *(UTP12)


Gene families : OG_42_0005593 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005593_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.A01985.1
Cluster HCAA Clusters: Cluster_181

Target Alias Description ECC score Gene Family Method Actions
AC209858.4_FG002 No alias transducin family protein / WD-40 repeat family protein 0.04 Orthogroups_2024-Update
At3g21540 No alias Transducin family protein / WD-40 repeat family protein... 0.07 Orthogroups_2024-Update
Bradi1g74940 No alias transducin family protein / WD-40 repeat family protein 0.12 Orthogroups_2024-Update
Cre10.g438700 No alias transducin family protein / WD-40 repeat family protein 0.13 Orthogroups_2024-Update
Glyma.03G186500 No alias transducin family protein / WD-40 repeat family protein 0.06 Orthogroups_2024-Update
HORVU4Hr1G083410.1 No alias SSU processome assembly factor *(UTP12) 0.04 Orthogroups_2024-Update
LOC_Os03g05720 No alias WD domain, G-beta repeat domain containing protein, expressed 0.03 Orthogroups_2024-Update
Mp2g05570.1 No alias SSU processome assembly factor (UTP12) 0.03 Orthogroups_2024-Update
Potri.006G121100 No alias transducin family protein / WD-40 repeat family protein 0.06 Orthogroups_2024-Update
Seita.9G537800.1 No alias SSU processome assembly factor *(UTP12) 0.14 Orthogroups_2024-Update
Sobic.001G501400.1 No alias SSU processome assembly factor *(UTP12) 0.08 Orthogroups_2024-Update
Solyc10g039190 No alias transducin family protein / WD-40 repeat family protein... 0.14 Orthogroups_2024-Update
Sopen10g012250 No alias WD domain, G-beta repeat 0.06 Orthogroups_2024-Update
evm.model.contig_4446.12 No alias (at3g21540 : 426.0) transducin family protein / WD-40... 0.08 Orthogroups_2024-Update
evm.model.tig00021721.26 No alias (at3g21540 : 312.0) transducin family protein / WD-40... 0.07 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0030490 maturation of SSU-rRNA IEP Predicted GO
MF GO:0030515 snoRNA binding IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044445 cytosolic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
CC GO:0090730 Las1 complex IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
CC GO:1902555 endoribonuclease complex IEP Predicted GO
CC GO:1902911 protein kinase complex IEP Predicted GO
CC GO:1905348 endonuclease complex IEP Predicted GO
CC GO:1905354 exoribonuclease complex IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR007148 SSU_processome_Utp12 787 887
IPR001680 WD40_repeat 567 599
IPR001680 WD40_repeat 142 176
IPR001680 WD40_repeat 96 134
IPR001680 WD40_repeat 65 92
IPR001680 WD40_repeat 647 684
IPR001680 WD40_repeat 181 217
IPR001680 WD40_repeat 394 424
No external refs found!