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Description : mRNA decay factor *(PAT1)
Gene families : OG_42_0001618 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001618_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Brassica rapa: Brara.A02021.1 | |
| Cluster | HCAA Clusters: Cluster_137 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| A4A49_02016 | No alias | hypothetical protein | 0.03 | Orthogroups_2024-Update | |
| Brara.F01158.1 | No alias | mRNA decay factor *(PAT1) | 0.03 | Orthogroups_2024-Update | |
| GRMZM2G101760 | No alias | Topoisomerase II-associated protein PAT1 | 0.03 | Orthogroups_2024-Update | |
| GRMZM2G118098 | No alias | Function unknown | 0.02 | Orthogroups_2024-Update | |
| Kfl00377_0140 | kfl00377_0140_v1.1 | (at1g79090 : 251.0) FUNCTIONS IN: molecular_function... | 0.01 | Orthogroups_2024-Update | |
| Pp1s16_396V6 | No alias | hypothetical protein similar to Arabidopsis thaliana... | 0.02 | Orthogroups_2024-Update | |
| Seita.5G014000.1 | No alias | mRNA decay factor *(PAT1) | 0.03 | Orthogroups_2024-Update | |
| Sopen12g002360 | No alias | hypothetical protein | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000155 | phosphorelay sensor kinase activity | IEP | Predicted GO |
| BP | GO:0000160 | phosphorelay signal transduction system | IEP | Predicted GO |
| MF | GO:0000976 | transcription regulatory region sequence-specific DNA binding | IEP | Predicted GO |
| MF | GO:0000977 | RNA polymerase II regulatory region sequence-specific DNA binding | IEP | Predicted GO |
| MF | GO:0001012 | RNA polymerase II regulatory region DNA binding | IEP | Predicted GO |
| MF | GO:0001067 | regulatory region nucleic acid binding | IEP | Predicted GO |
| MF | GO:0004332 | fructose-bisphosphate aldolase activity | IEP | Predicted GO |
| MF | GO:0004506 | squalene monooxygenase activity | IEP | Predicted GO |
| MF | GO:0004673 | protein histidine kinase activity | IEP | Predicted GO |
| CC | GO:0005778 | peroxisomal membrane | IEP | Predicted GO |
| BP | GO:0016559 | peroxisome fission | IEP | Predicted GO |
| MF | GO:0016655 | oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | IEP | Predicted GO |
| MF | GO:0016775 | phosphotransferase activity, nitrogenous group as acceptor | IEP | Predicted GO |
| MF | GO:0016832 | aldehyde-lyase activity | IEP | Predicted GO |
| CC | GO:0031903 | microbody membrane | IEP | Predicted GO |
| MF | GO:0032422 | purine-rich negative regulatory element binding | IEP | Predicted GO |
| BP | GO:0035556 | intracellular signal transduction | IEP | Predicted GO |
| MF | GO:0042910 | xenobiotic transmembrane transporter activity | IEP | Predicted GO |
| MF | GO:0043565 | sequence-specific DNA binding | IEP | Predicted GO |
| MF | GO:0044212 | transcription regulatory region DNA binding | IEP | Predicted GO |
| CC | GO:0044438 | microbody part | IEP | Predicted GO |
| CC | GO:0044439 | peroxisomal part | IEP | Predicted GO |
| BP | GO:0048285 | organelle fission | IEP | Predicted GO |
| MF | GO:1990837 | sequence-specific double-stranded DNA binding | IEP | Predicted GO |
| MF | GO:2001070 | starch binding | IEP | Predicted GO |
No InterPro domains available for this sequence
| No external refs found! |