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  5. Brara.A02052.1

Brara.A02052.1


Description : LHC-related protein *(ELIP)


Gene families : OG_42_0000421 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000421_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.A02052.1
Cluster HCAA Clusters: Cluster_188

Target Alias Description ECC score Gene Family Method Actions
A4A49_24316 No alias early light-induced protein 1, chloroplastic 0.03 Orthogroups_2024-Update
A4A49_27530 No alias early light-induced protein 1, chloroplastic 0.04 Orthogroups_2024-Update
At3g22840 No alias ELIP1 [Source:UniProtKB/TrEMBL;Acc:A0A178VCA8] 0.04 Orthogroups_2024-Update
At4g14690 No alias Early light-induced protein 2, chloroplastic... 0.05 Orthogroups_2024-Update
Bradi1g55560 No alias Chlorophyll A-B binding family protein 0.03 Orthogroups_2024-Update
Bradi1g55570 No alias Chlorophyll A-B binding family protein 0.04 Orthogroups_2024-Update
Bradi1g55600 No alias Chlorophyll A-B binding family protein 0.03 Orthogroups_2024-Update
Bradi1g55610 No alias Chlorophyll A-B binding family protein 0.05 Orthogroups_2024-Update
Bradi1g55620 No alias Chlorophyll A-B binding family protein 0.04 Orthogroups_2024-Update
Cre09.g394325 No alias Chlorophyll A-B binding family protein 0.01 Orthogroups_2024-Update
Cre14.g626750 No alias Chlorophyll A-B binding family protein 0.02 Orthogroups_2024-Update
Glyma.20G150600 No alias Chlorophyll A-B binding family protein 0.03 Orthogroups_2024-Update
HORVU0Hr1G008960.2 No alias LHC-related protein *(ELIP) 0.03 Orthogroups_2024-Update
HORVU0Hr1G013030.2 No alias LHC-related protein *(ELIP) 0.03 Orthogroups_2024-Update
HORVU0Hr1G023360.2 No alias LHC-related protein *(ELIP) 0.04 Orthogroups_2024-Update
HORVU0Hr1G031930.1 No alias LHC-related protein *(ELIP) 0.04 Orthogroups_2024-Update
HORVU0Hr1G038220.1 No alias LHC-related protein *(ELIP) 0.04 Orthogroups_2024-Update
HORVU1Hr1G067070.3 No alias LHC-related protein *(ELIP) 0.03 Orthogroups_2024-Update
HORVU1Hr1G067080.3 No alias LHC-related protein *(ELIP) 0.03 Orthogroups_2024-Update
HORVU1Hr1G087740.1 No alias LHC-related protein *(ELIP) 0.04 Orthogroups_2024-Update
HORVU4Hr1G063190.1 No alias LHC-related protein *(ELIP) 0.04 Orthogroups_2024-Update
HORVU4Hr1G066740.1 No alias LHC-related protein *(ELIP) 0.03 Orthogroups_2024-Update
HORVU4Hr1G066800.8 No alias LHC-related protein *(ELIP) 0.03 Orthogroups_2024-Update
HORVU4Hr1G066810.7 No alias LHC-related protein *(ELIP) 0.03 Orthogroups_2024-Update
HORVU5Hr1G063570.1 No alias LHC-related protein *(ELIP) 0.03 Orthogroups_2024-Update
HORVU5Hr1G063590.1 No alias LHC-related protein *(ELIP) 0.04 Orthogroups_2024-Update
HORVU5Hr1G063620.1 No alias LHC-related protein *(ELIP) 0.04 Orthogroups_2024-Update
HORVU5Hr1G063630.3 No alias LHC-related protein *(ELIP) 0.03 Orthogroups_2024-Update
HORVU5Hr1G063650.1 No alias LHC-related protein *(ELIP) 0.04 Orthogroups_2024-Update
HORVU5Hr1G063660.1 No alias LHC-related protein *(ELIP) 0.04 Orthogroups_2024-Update
HORVU5Hr1G063670.1 No alias LHC-related protein *(ELIP) 0.03 Orthogroups_2024-Update
Kfl00052_0260 kfl00052_0260_v1.1 no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
LOC_Os07g08150 No alias early light-induced protein, chloroplast precursor,... 0.02 Orthogroups_2024-Update
MA_10058549g0010 No alias (at3g22840 : 143.0) Encodes an early light-inducible... 0.03 Orthogroups_2024-Update
MA_10432802g0010 No alias (p11432|eli_pea : 172.0) Early light-induced protein,... 0.03 Orthogroups_2024-Update
MA_129323g0030 No alias (at3g22840 : 135.0) Encodes an early light-inducible... 0.03 Orthogroups_2024-Update
MA_183315g0010 No alias (p11432|eli_pea : 138.0) Early light-induced protein,... 0.03 Orthogroups_2024-Update
MA_4245347g0010 No alias (at3g22840 : 103.0) Encodes an early light-inducible... 0.03 Orthogroups_2024-Update
Mp6g14520.1 No alias ELIP LHC-related protein 0.03 Orthogroups_2024-Update
Pp1s78_96V6 No alias elip1.8 gene for putative early light-induced protein ELIP1.8 0.03 Orthogroups_2024-Update
Seita.2G053700.1 No alias LHC-related protein *(ELIP) 0.03 Orthogroups_2024-Update
Solyc09g082690 No alias superoxide dismutase 0.03 Orthogroups_2024-Update
evm.model.contig_3431.6 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004176 ATP-dependent peptidase activity IEP Predicted GO
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
MF GO:0004602 glutathione peroxidase activity IEP Predicted GO
MF GO:0005048 signal sequence binding IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
BP GO:0006621 protein retention in ER lumen IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006813 potassium ion transport IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
MF GO:0009975 cyclase activity IEP Predicted GO
MF GO:0009976 tocopherol cyclase activity IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0016846 carbon-sulfur lyase activity IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
MF GO:0030145 manganese ion binding IEP Predicted GO
MF GO:0030151 molybdenum ion binding IEP Predicted GO
BP GO:0032507 maintenance of protein location in cell IEP Predicted GO
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Predicted GO
MF GO:0042277 peptide binding IEP Predicted GO
MF GO:0042623 ATPase activity, coupled IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
BP GO:0045185 maintenance of protein location IEP Predicted GO
MF GO:0046923 ER retention sequence binding IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0051235 maintenance of location IEP Predicted GO
BP GO:0051651 maintenance of location in cell IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
BP GO:0072595 maintenance of protein localization in organelle IEP Predicted GO
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 92 132
IPR022796 Chloroa_b-bind 149 183
No external refs found!