1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.A02054.1

Brara.A02054.1


Description : alpha amylase


Gene families : OG_42_0000605 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000605_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.A02054.1
Cluster HCAA Clusters: Cluster_360

Target Alias Description ECC score Gene Family Method Actions
GRMZM5G863596 No alias alpha-amylase-like 3 0.02 Orthogroups_2024-Update
Glyma.11G153301 No alias alpha-amylase-like 3 0.03 Orthogroups_2024-Update
Kfl00228_0110 kfl00228_0110_v1.1 (p04063|amy2_horvu : 536.0) Alpha-amylase type B isozyme... 0.02 Orthogroups_2024-Update
LOC_Os02g52700 No alias alpha-amylase precursor, putative, expressed 0.02 Orthogroups_2024-Update
Mp1g24800.1 No alias alpha amylase 0.03 Orthogroups_2024-Update
Mp3g22820.1 No alias alpha amylase 0.02 Orthogroups_2024-Update
Potri.002G126300 No alias alpha-amylase-like 0.03 Orthogroups_2024-Update
Pp1s223_59V6 No alias pentatricopeptide repeat-containing 0.02 Orthogroups_2024-Update
Pp1s526_11V6 No alias glycoside hydrolase family 13 protein 0.03 Orthogroups_2024-Update
Sobic.004G309200.1 No alias alpha amylase 0.03 Orthogroups_2024-Update
Solyc04g078930 No alias Alpha-amylase (AHRD V3.3 *** K4BUX7_SOLLC) 0.06 Orthogroups_2024-Update
evm.model.contig_2050.12 No alias (at1g69830 : 347.0) Encodes a plastid-localized... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004556 alpha-amylase activity IEA 16Dec
MF GO:0005509 calcium ion binding IEA 16Dec
BP GO:0005975 carbohydrate metabolic process IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004427 inorganic diphosphatase activity IEP Predicted GO
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Predicted GO
BP GO:0009308 amine metabolic process IEP Predicted GO
BP GO:0009690 cytokinin metabolic process IEP Predicted GO
BP GO:0010817 regulation of hormone levels IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0019139 cytokinin dehydrogenase activity IEP Predicted GO
CC GO:0033179 proton-transporting V-type ATPase, V0 domain IEP Predicted GO
BP GO:0034754 cellular hormone metabolic process IEP Predicted GO
BP GO:0042445 hormone metabolic process IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
BP GO:0065008 regulation of biological quality IEP Predicted GO
InterPro domains Description Start Stop
IPR006047 Glyco_hydro_13_cat_dom 49 208
IPR012850 A-amylase_bs_C 346 404
No external refs found!