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  5. Brara.A02074.1

Brara.A02074.1


Description : pre-60S ribosomal-subunit proteome export factor *(ARX1)


Gene families : OG_42_0004013 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004013_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.A02074.1
Cluster HCAA Clusters: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
79780 No alias metallopeptidase M24 family protein 0.09 Orthogroups_2024-Update
A4A49_28171 No alias erbb-3 binding protein 1 0.04 Orthogroups_2024-Update
At3g51800 No alias metallopeptidase M24 family protein [Source:TAIR;Acc:AT3G51800] 0.1 Orthogroups_2024-Update
Bradi2g28680 No alias metallopeptidase M24 family protein 0.04 Orthogroups_2024-Update
Brara.C04383.1 No alias pre-60S ribosomal-subunit proteome export factor *(ARX1) 0.07 Orthogroups_2024-Update
Glyma.01G119400 No alias metallopeptidase M24 family protein 0.06 Orthogroups_2024-Update
Glyma.03G055500 No alias metallopeptidase M24 family protein 0.07 Orthogroups_2024-Update
Glyma.07G152700 No alias metallopeptidase M24 family protein 0.06 Orthogroups_2024-Update
Glyma.18G203800 No alias metallopeptidase M24 family protein 0.04 Orthogroups_2024-Update
HORVU1Hr1G059960.2 No alias pre-60S ribosomal-subunit proteome export factor *(ARX1) 0.04 Orthogroups_2024-Update
LOC_Os05g28280 No alias peptidase, M24 family protein, putative, expressed 0.03 Orthogroups_2024-Update
Mp8g14760.1 No alias pre-60S ribosomal subunit export factor (ARX1) 0.02 Orthogroups_2024-Update
Potri.006G102200 No alias metallopeptidase M24 family protein 0.07 Orthogroups_2024-Update
Potri.016G119700 No alias metallopeptidase M24 family protein 0.04 Orthogroups_2024-Update
Pp1s119_137V6 No alias proliferation-associated protein 2g4 0.05 Orthogroups_2024-Update
Pp1s264_34V6 No alias proliferation-associated protein 2g4 0.04 Orthogroups_2024-Update
Seita.3G277800.1 No alias pre-60S ribosomal-subunit proteome export factor *(ARX1) 0.09 Orthogroups_2024-Update
Sobic.009G104100.1 No alias pre-60S ribosomal-subunit proteome export factor *(ARX1) 0.09 Orthogroups_2024-Update
Solyc06g007200 No alias Protein phosphatase 2C (AHRD V3.3 *** Q3V656_SOLTU) 0.06 Orthogroups_2024-Update
Solyc06g082090 No alias Methionine aminopeptidase,related (AHRD V3.3 ***... 0.05 Orthogroups_2024-Update
Sopen06g033480 No alias Metallopeptidase family M24 0.07 Orthogroups_2024-Update
evm.model.contig_3390.5 No alias (at3g51800 : 276.0) putative nuclear DNA-binding protein... 0.02 Orthogroups_2024-Update
evm.model.tig00000553.33 No alias (at3g51800 : 295.0) putative nuclear DNA-binding protein... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Predicted GO
CC GO:0000152 nuclear ubiquitin ligase complex IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0003937 IMP cyclohydrolase activity IEP Predicted GO
MF GO:0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity IEP Predicted GO
MF GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005680 anaphase-promoting complex IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006164 purine nucleotide biosynthetic process IEP Predicted GO
BP GO:0006188 IMP biosynthetic process IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016597 amino acid binding IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Predicted GO
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
MF GO:0016842 amidine-lyase activity IEP Predicted GO
MF GO:0019238 cyclohydrolase activity IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0031406 carboxylic acid binding IEP Predicted GO
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
MF GO:0043177 organic acid binding IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046040 IMP metabolic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0072522 purine-containing compound biosynthetic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000994 Pept_M24 22 225
No external refs found!