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  5. Brara.A02143.1

Brara.A02143.1


Description : bHLH-type transcription factor


Gene families : OG_42_0000531 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000531_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.A02143.1
Cluster HCAA Clusters: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
Glyma.01G123000 No alias APRATAXIN-like 0.02 Orthogroups_2024-Update
LOC_Os01g51140 No alias helix-loop-helix DNA-binding domain containing protein, expressed 0.02 Orthogroups_2024-Update
Potri.001G191800 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Sopen03g040050 No alias Helix-loop-helix DNA-binding domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003917 DNA topoisomerase type I activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
BP GO:0007030 Golgi organization IEP Predicted GO
BP GO:0016567 protein ubiquitination IEP Predicted GO
BP GO:0032446 protein modification by small protein conjugation IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
InterPro domains Description Start Stop
IPR011598 bHLH_dom 138 178
No external refs found!