Brara.A02197.1

Description : component *(eL13) of large ribosomal-subunit (LSU) proteome

Gene families : OG_42_0002061 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002061_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.A02197.1
Cluster	HCAA Clusters: Cluster_114

Target	Alias	Description	ECC score	Gene Family Method
165483	No alias	breast basic conserved 1	0.05	Orthogroups_2024-Update
266648	No alias	breast basic conserved 1	0.01	Orthogroups_2024-Update
A4A49_61903	No alias	60s ribosomal protein l13-1	0.08	Orthogroups_2024-Update
At3g49010	No alias	60S ribosomal protein L13...	0.06	Orthogroups_2024-Update
Bradi3g01600	No alias	breast basic conserved 1	0.25	Orthogroups_2024-Update
Bradi3g16170	No alias	breast basic conserved 1	0.19	Orthogroups_2024-Update
Brara.I00594.1	No alias	component *(eL13) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
Cre14.g630100	No alias	breast basic conserved 1	0.17	Orthogroups_2024-Update
Glyma.04G122700	No alias	breast basic conserved 1	0.14	Orthogroups_2024-Update
Glyma.09G214400	No alias	breast basic conserved 1	0.12	Orthogroups_2024-Update
Glyma.16G074600	No alias	breast basic conserved 1	0.04	Orthogroups_2024-Update
Glyma.16G106300	No alias	breast basic conserved 1	0.07	Orthogroups_2024-Update
HORVU6Hr1G009400.2	No alias	component *(eL13) of large ribosomal-subunit (LSU) proteome	0.18	Orthogroups_2024-Update
HORVU7Hr1G067060.1	No alias	component *(eL13) of large ribosomal-subunit (LSU) proteome	0.15	Orthogroups_2024-Update
Kfl00461_0040	kfl00461_0040_v1.1	(p41129\|rl132_brana : 229.0) 60S ribosomal protein L13-2...	0.1	Orthogroups_2024-Update
LOC_Os03g37970	No alias	ribosomal protein L13, putative, expressed	0.04	Orthogroups_2024-Update
LOC_Os06g02510	No alias	ribosomal protein L13, putative, expressed	0.04	Orthogroups_2024-Update
MA_10430790g0030	No alias	(at3g49010 : 263.0) Encodes 60S ribosomal protein L13....	0.08	Orthogroups_2024-Update
Mp1g04920.1	No alias	component RPL13 of LSU proteome component	0.07	Orthogroups_2024-Update
Mp2g19790.1	No alias	component RPL13 of LSU proteome component	0.17	Orthogroups_2024-Update
PSME_00003763-RA	No alias	(at3g49010 : 179.0) Encodes 60S ribosomal protein L13....	0.12	Orthogroups_2024-Update
PSME_00040067-RA	No alias	(at3g49010 : 296.0) Encodes 60S ribosomal protein L13....	0.03	Orthogroups_2024-Update
PSME_00045638-RA	No alias	(at3g49010 : 335.0) Encodes 60S ribosomal protein L13....	0.06	Orthogroups_2024-Update
Potri.003G102800	No alias	breast basic conserved 1	0.09	Orthogroups_2024-Update
Potri.013G027600	No alias	breast basic conserved 1	0.05	Orthogroups_2024-Update
Potri.016G082300	No alias	breast basic conserved 1	0.04	Orthogroups_2024-Update
Pp1s126_52V6	No alias	60s ribosomal protein l13-2	0.04	Orthogroups_2024-Update
Pp1s21_106V6	No alias	60s ribosomal protein l13-2	0.31	Orthogroups_2024-Update
Pp1s459_9V6	No alias	60s ribosomal protein l13-2	0.2	Orthogroups_2024-Update
Pp1s58_38V6	No alias	60s ribosomal protein l13-2	0.06	Orthogroups_2024-Update
Seita.5G275700.1	No alias	component *(eL13) of large ribosomal-subunit (LSU) proteome	0.16	Orthogroups_2024-Update
Seita.5G276200.1	No alias	component *(eL13) of large ribosomal-subunit (LSU) proteome	0.17	Orthogroups_2024-Update
Sobic.003G408100.1	No alias	component *(eL13) of large ribosomal-subunit (LSU) proteome	0.3	Orthogroups_2024-Update
Sobic.009G065400.1	No alias	component *(eL13) of large ribosomal-subunit (LSU) proteome	0.25	Orthogroups_2024-Update
Sobic.009G237200.1	No alias	component *(eL13) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Solyc08g075700	No alias	60S ribosomal protein L13 (AHRD V3.3 *** K4CMT7_SOLLC)	0.32	Orthogroups_2024-Update
Solyc12g096150	No alias	60S ribosomal protein L13 (AHRD V3.3 *** K4DH88_SOLLC)	0.25	Orthogroups_2024-Update
Sopen08g024350	No alias	Ribosomal protein L13e	0.31	Orthogroups_2024-Update
Sopen12g032030	No alias	Ribosomal protein L13e	0.1	Orthogroups_2024-Update
evm.model.contig_2033.18	No alias	(at3g49010 : 217.0) Encodes 60S ribosomal protein L13....	0.44	Orthogroups_2024-Update
evm.model.tig00020629.36	No alias	(p41128\|rl131_brana : 211.0) 60S ribosomal protein L13-1...	0.13	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0004017	adenylate kinase activity	IEP	Predicted GO
BP	GO:0006396	RNA processing	IEP	Predicted GO
BP	GO:0006399	tRNA metabolic process	IEP	Predicted GO
BP	GO:0006400	tRNA modification	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
BP	GO:0008033	tRNA processing	IEP	Predicted GO
MF	GO:0008097	5S rRNA binding	IEP	Predicted GO
MF	GO:0008175	tRNA methyltransferase activity	IEP	Predicted GO
MF	GO:0016426	tRNA (adenine) methyltransferase activity	IEP	Predicted GO
MF	GO:0016429	tRNA (adenine-N1-)-methyltransferase activity	IEP	Predicted GO
MF	GO:0016776	phosphotransferase activity, phosphate group as acceptor	IEP	Predicted GO
MF	GO:0019205	nucleobase-containing compound kinase activity	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
BP	GO:0030488	tRNA methylation	IEP	Predicted GO
CC	GO:0031515	tRNA (m1A) methyltransferase complex	IEP	Predicted GO
BP	GO:0034470	ncRNA processing	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
CC	GO:0034708	methyltransferase complex	IEP	Predicted GO
CC	GO:0043527	tRNA methyltransferase complex	IEP	Predicted GO
MF	GO:0050145	nucleoside monophosphate kinase activity	IEP	Predicted GO
MF	GO:0097159	organic cyclic compound binding	IEP	Predicted GO
MF	GO:1901363	heterocyclic compound binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001380	Ribosomal_L13e	6	184

External Links

No external refs found!

Brara.A02197.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation