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  5. Brara.A02352.1

Brara.A02352.1


Description : RNA helicase component *(MTR4) of TRAMP nucleolar regulation complex


Gene families : OG_42_0001297 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001297_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.A02352.1
Cluster HCAA Clusters: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
Bradi1g52230 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.03 Orthogroups_2024-Update
Cre02.g117900 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.02 Orthogroups_2024-Update
Cre06.g289950 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.02 Orthogroups_2024-Update
HORVU2Hr1G028060.16 No alias RNA helicase component *(HEN2) of Nuclear Exosome... 0.04 Orthogroups_2024-Update
HORVU7Hr1G001080.1 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.03 Orthogroups_2024-Update
Kfl00024_0010 kfl00024_0010_v1.1 (at3g46960 : 612.0) RNA helicase, ATP-dependent,... 0.01 Orthogroups_2024-Update
Kfl00160_0200 kfl00160_0200_v1.1 (at2g06990 : 1082.0) encodes a putative DExH-box RNA... 0.02 Orthogroups_2024-Update
Pp1s69_14V6 No alias superkiller viralicidic activity 2-like 2 0.02 Orthogroups_2024-Update
Seita.4G003400.1 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.04 Orthogroups_2024-Update
Sobic.010G003400.1 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.03 Orthogroups_2024-Update
evm.model.tig00020723.108 No alias (at1g59760 : 938.0) RNA helicase, ATP-dependent,... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA 16Dec
MF GO:0005524 ATP binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003909 DNA ligase activity IEP Predicted GO
MF GO:0003910 DNA ligase (ATP) activity IEP Predicted GO
MF GO:0004659 prenyltransferase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006310 DNA recombination IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008318 protein prenyltransferase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
BP GO:0018342 protein prenylation IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
MF GO:0035596 methylthiotransferase activity IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0050497 transferase activity, transferring alkylthio groups IEP Predicted GO
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:0097354 prenylation IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR012961 Ski2_C 813 983
IPR001650 Helicase_C 356 462
IPR025696 rRNA_proc-arch_dom 516 786
IPR011545 DEAD/DEAH_box_helicase_dom 71 217
No external refs found!