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  5. Brara.A02435.1

Brara.A02435.1


Description : cofactor of plastid-encoded RNA polymerase *(TAC16)


Gene families : OG_42_0008396 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008396_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.A02435.1
Cluster HCAA Clusters: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
At3g46780 No alias Protein plastid transcriptionally active 16,... 0.06 Orthogroups_2024-Update
Glyma.11G135900 No alias plastid transcriptionally active 16 0.08 Orthogroups_2024-Update
Glyma.12G059600 No alias plastid transcriptionally active 16 0.06 Orthogroups_2024-Update
HORVU3Hr1G065580.5 No alias Unknown function 0.04 Orthogroups_2024-Update
Kfl00302_0070 kfl00302_0070_v1.1 (at3g46780 : 160.0) plastid transcriptionally active 16... 0.07 Orthogroups_2024-Update
LOC_Os05g22614 No alias PTAC16, putative, expressed 0.02 Orthogroups_2024-Update
MA_806g0020 No alias (at3g46780 : 241.0) plastid transcriptionally active 16... 0.05 Orthogroups_2024-Update
Mp8g16460.1 No alias TAC16 cofactor of plastid-encoded RNA polymerase 0.02 Orthogroups_2024-Update
Pp1s230_36V6 No alias pyridine nucleotide binding protein 0.07 Orthogroups_2024-Update
Seita.6G105200.1 No alias cofactor of plastid-encoded RNA polymerase *(TAC16) 0.05 Orthogroups_2024-Update
Sobic.009G091800.2 No alias cofactor of plastid-encoded RNA polymerase *(TAC16) 0.09 Orthogroups_2024-Update
Sobic.009G091850.1 No alias Unknown function 0.11 Orthogroups_2024-Update
Solyc06g005710 No alias Protein plastid transcriptionally active 16,... 0.11 Orthogroups_2024-Update
Sopen06g001690 No alias NADH(P)-binding 0.12 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009240 isopentenyl diphosphate biosynthetic process IEP Predicted GO
CC GO:0009507 chloroplast IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009536 plastid IEP Predicted GO
CC GO:0009538 photosystem I reaction center IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0010109 regulation of photosynthesis IEP Predicted GO
BP GO:0010207 photosystem II assembly IEP Predicted GO
MF GO:0010242 oxygen evolving activity IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Predicted GO
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Predicted GO
MF GO:0016726 oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor IEP Predicted GO
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
MF GO:0033743 peptide-methionine (R)-S-oxide reductase activity IEP Predicted GO
BP GO:0042548 regulation of photosynthesis, light reaction IEP Predicted GO
BP GO:0042549 photosystem II stabilization IEP Predicted GO
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046490 isopentenyl diphosphate metabolic process IEP Predicted GO
BP GO:0050992 dimethylallyl diphosphate biosynthetic process IEP Predicted GO
BP GO:0050993 dimethylallyl diphosphate metabolic process IEP Predicted GO
MF GO:0051745 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity IEP Predicted GO
BP GO:0071586 CAAX-box protein processing IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR016040 NAD(P)-bd_dom 100 312
No external refs found!