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  5. Brara.A02559.1

Brara.A02559.1


Description : regulatory component *(FYVE4) of ESCRT-III complex


Gene families : OG_42_0008397 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008397_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.A02559.1
Cluster HCAA Clusters: Cluster_272

Target Alias Description ECC score Gene Family Method Actions
Glyma.07G187500 No alias phosphoinositide binding 0.03 Orthogroups_2024-Update
Mp5g14260.1 No alias no hits & (original description: none) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000381 regulation of alternative mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0003873 6-phosphofructo-2-kinase activity IEP Predicted GO
MF GO:0004000 adenosine deaminase activity IEP Predicted GO
MF GO:0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity IEP Predicted GO
MF GO:0004751 ribose-5-phosphate isomerase activity IEP Predicted GO
CC GO:0005685 U1 snRNP IEP Predicted GO
BP GO:0006000 fructose metabolic process IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006376 mRNA splice site selection IEP Predicted GO
BP GO:0006476 protein deacetylation IEP Predicted GO
BP GO:0006621 protein retention in ER lumen IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Predicted GO
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP Predicted GO
BP GO:0015936 coenzyme A metabolic process IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016575 histone deacetylation IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
MF GO:0016860 intramolecular oxidoreductase activity IEP Predicted GO
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Predicted GO
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Predicted GO
MF GO:0019239 deaminase activity IEP Predicted GO
BP GO:0019637 organophosphate metabolic process IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
MF GO:0019781 NEDD8 activating enzyme activity IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
BP GO:0032507 maintenance of protein location in cell IEP Predicted GO
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Predicted GO
BP GO:0035601 protein deacylation IEP Predicted GO
BP GO:0043085 positive regulation of catalytic activity IEP Predicted GO
BP GO:0043484 regulation of RNA splicing IEP Predicted GO
BP GO:0044093 positive regulation of molecular function IEP Predicted GO
BP GO:0045116 protein neddylation IEP Predicted GO
BP GO:0045185 maintenance of protein location IEP Predicted GO
MF GO:0046923 ER retention sequence binding IEP Predicted GO
BP GO:0048024 regulation of mRNA splicing, via spliceosome IEP Predicted GO
BP GO:0050684 regulation of mRNA processing IEP Predicted GO
BP GO:0051651 maintenance of location in cell IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
BP GO:0072595 maintenance of protein localization in organelle IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
BP GO:0098732 macromolecule deacylation IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
BP GO:1903311 regulation of mRNA metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000306 Znf_FYVE 18 75
No external refs found!