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  5. Brara.A02580.1

Brara.A02580.1


Description : mTERF-type transcription factor


Gene families : OG_42_0000078 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000078_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.A02580.1
Cluster HCAA Clusters: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
444400 No alias plastid transcriptionally active 15 0.03 Orthogroups_2024-Update
At1g62110 No alias At1g62110 [Source:UniProtKB/TrEMBL;Acc:Q8GY68] 0.03 Orthogroups_2024-Update
At5g64950 No alias Emb [Source:UniProtKB/TrEMBL;Acc:Q9LV83] 0.04 Orthogroups_2024-Update
Bradi1g16160 No alias Mitochondrial transcription termination factor family protein 0.04 Orthogroups_2024-Update
Bradi3g00830 No alias Mitochondrial transcription termination factor family protein 0.03 Orthogroups_2024-Update
Glyma.08G306100 No alias Mitochondrial transcription termination factor family protein 0.03 Orthogroups_2024-Update
Glyma.15G153600 No alias Mitochondrial transcription termination factor family protein 0.04 Orthogroups_2024-Update
HORVU2Hr1G024310.1 No alias mTERF-type transcription factor 0.06 Orthogroups_2024-Update
HORVU5Hr1G056910.1 No alias mTERF-type transcription factor 0.03 Orthogroups_2024-Update
HORVU6Hr1G003390.3 No alias mTERF-type transcription factor 0.03 Orthogroups_2024-Update
HORVU6Hr1G003570.23 No alias mTERF-type transcription factor 0.03 Orthogroups_2024-Update
HORVU6Hr1G005710.1 No alias mTERF-type transcription factor 0.03 Orthogroups_2024-Update
HORVU6Hr1G075340.1 No alias mTERF-type transcription factor 0.05 Orthogroups_2024-Update
HORVU7Hr1G081400.3 No alias mTERF-type transcription factor 0.04 Orthogroups_2024-Update
MA_26585g0010 No alias (at5g64950 : 83.2) Mitochondrial transcription... 0.04 Orthogroups_2024-Update
MA_804585g0010 No alias (at5g64950 : 91.3) Mitochondrial transcription... 0.03 Orthogroups_2024-Update
PSME_00030142-RA No alias (at5g64950 : 89.4) Mitochondrial transcription... 0.04 Orthogroups_2024-Update
PSME_00056620-RA No alias (at1g79220 : 139.0) Mitochondrial transcription... 0.05 Orthogroups_2024-Update
Potri.008G216200 No alias Mitochondrial transcription termination factor family protein 0.02 Orthogroups_2024-Update
Pp1s219_66V6 No alias No description available 0.03 Orthogroups_2024-Update
Seita.4G092000.1 No alias mTERF-type transcription factor 0.06 Orthogroups_2024-Update
Seita.4G094400.1 No alias mTERF-type transcription factor 0.06 Orthogroups_2024-Update
Seita.4G095000.1 No alias mTERF-type transcription factor 0.05 Orthogroups_2024-Update
Seita.6G130600.1 No alias mTERF-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.002G179800.1 No alias mTERF-type transcription factor 0.06 Orthogroups_2024-Update
Solyc12g010650 No alias Mitochondrial transcription termination factor family... 0.02 Orthogroups_2024-Update
Sopen04g005870 No alias mTERF 0.03 Orthogroups_2024-Update
Sopen04g028710 No alias mTERF 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEA 16Dec
BP GO:0006355 regulation of transcription, DNA-templated IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006952 defense response IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR003690 MTERF 83 286
IPR003690 MTERF 274 387
No external refs found!