1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.A02683.1

Brara.A02683.1


Description : transcriptional repressor *(IAA/AUX)


Gene families : OG_42_0000083 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.A02683.1
Cluster HCAA Clusters: Cluster_139

Target Alias Description ECC score Gene Family Method Actions
At1g51950 No alias Auxin-responsive protein IAA18... 0.03 Orthogroups_2024-Update
At3g23050 No alias Auxin-responsive protein IAA7... 0.05 Orthogroups_2024-Update
At5g25890 No alias Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:Q2VWA1] 0.03 Orthogroups_2024-Update
At5g43700 No alias Auxin-responsive protein IAA4... 0.03 Orthogroups_2024-Update
Bradi2g33417 No alias phytochrome-associated protein 1 0.03 Orthogroups_2024-Update
Bradi3g08667 No alias indole-3-acetic acid inducible 18 0.03 Orthogroups_2024-Update
Brara.I00828.1 No alias transcriptional repressor *(IAA/AUX) 0.03 Orthogroups_2024-Update
GRMZM2G057067 No alias phytochrome-associated protein 1 0.02 Orthogroups_2024-Update
Glyma.20G225000 No alias indoleacetic acid-induced protein 16 0.04 Orthogroups_2024-Update
MA_10431093g0030 No alias (p0c132|iaa30_orysa : 229.0) Auxin-responsive protein... 0.02 Orthogroups_2024-Update
Potri.001G190300 No alias phytochrome-associated protein 1 0.03 Orthogroups_2024-Update
Potri.010G078300 No alias indole-3-acetic acid 7 0.03 Orthogroups_2024-Update
Solyc09g065850 No alias auxin-regulated IAA3 0.02 Orthogroups_2024-Update
Sopen03g001400 No alias AUX/IAA family 0.03 Orthogroups_2024-Update
Sopen03g039380 No alias AUX/IAA family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
CC GO:0000439 transcription factor TFIIH core complex IEP Predicted GO
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0004089 carbonate dehydratase activity IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
CC GO:0005685 U1 snRNP IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006376 mRNA splice site selection IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016571 histone methylation IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Predicted GO
BP GO:0018022 peptidyl-lysine methylation IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
CC GO:0030880 RNA polymerase complex IEP Predicted GO
MF GO:0030976 thiamine pyrophosphate binding IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
BP GO:0034968 histone lysine methylation IEP Predicted GO
MF GO:0035299 inositol pentakisphosphate 2-kinase activity IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
InterPro domains Description Start Stop
IPR033389 AUX/IAA_dom 39 71
IPR033389 AUX/IAA_dom 73 167
No external refs found!