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  5. Brara.A02884.1

Brara.A02884.1


Description : PHD-type transcription factor


Gene families : OG_42_0002398 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002398_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.A02884.1
Cluster HCAA Clusters: Cluster_187

Target Alias Description ECC score Gene Family Method Actions
Glyma.13G100500 No alias pathogenesis related homeodomain protein A 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001356 Homeobox_dom 605 650
IPR019787 Znf_PHD-finger 265 320
No external refs found!