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  5. Brara.A03065.1

Brara.A03065.1


Description : subfamily ABCG transporter


Gene families : OG_42_0000055 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000055_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.A03065.1
Cluster HCAA Clusters: Cluster_192

Target Alias Description ECC score Gene Family Method Actions
412710 No alias pleiotropic drug resistance 12 0.02 Orthogroups_2024-Update
429390 No alias pleiotropic drug resistance 12 0.04 Orthogroups_2024-Update
96729 No alias pleiotropic drug resistance 1 0.02 Orthogroups_2024-Update
At1g15210 No alias PDR7 [Source:UniProtKB/TrEMBL;Acc:A0A178WAD4] 0.04 Orthogroups_2024-Update
At1g15520 No alias ABC transporter G family member 40... 0.03 Orthogroups_2024-Update
At2g37280 No alias pleiotropic drug resistance 5 [Source:TAIR;Acc:AT2G37280] 0.03 Orthogroups_2024-Update
Bradi4g28270 No alias pleiotropic drug resistance 12 0.02 Orthogroups_2024-Update
Brara.F01034.1 No alias subfamily ABCG transporter 0.04 Orthogroups_2024-Update
Brara.F01068.1 No alias subfamily ABCG transporter 0.04 Orthogroups_2024-Update
Cre16.g655450 No alias pleiotropic drug resistance 3 0.02 Orthogroups_2024-Update
Glyma.17G039300 No alias pleiotropic drug resistance 9 0.03 Orthogroups_2024-Update
HORVU4Hr1G081040.4 No alias subfamily ABCG transporter 0.04 Orthogroups_2024-Update
LOC_Os01g08260 No alias pleiotropic drug resistance protein 4, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os11g37700 No alias pleiotropic drug resistance protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os12g13720 No alias Plant PDR ABC transporter associated domain containing... 0.02 Orthogroups_2024-Update
MA_173274g0010 No alias (q5z9s8|pdr12_orysa : 429.0) Pleiotropic drug resistance... 0.03 Orthogroups_2024-Update
PSME_00008988-RA No alias (q5z9s8|pdr12_orysa : 1221.0) Pleiotropic drug... 0.03 Orthogroups_2024-Update
PSME_00019551-RA No alias (q76cu2|pdr1_tobac : 1217.0) Pleiotropic drug resistance... 0.02 Orthogroups_2024-Update
Potri.001G048700 No alias pleiotropic drug resistance 12 0.03 Orthogroups_2024-Update
Potri.003G179000 No alias pleiotropic drug resistance 12 0.02 Orthogroups_2024-Update
Potri.018G074500 No alias pleiotropic drug resistance 4 0.02 Orthogroups_2024-Update
Seita.2G179600.1 No alias subfamily ABCG transporter 0.02 Orthogroups_2024-Update
Seita.2G335300.1 No alias subfamily ABCG transporter 0.03 Orthogroups_2024-Update
Seita.4G181500.1 No alias subfamily ABCG transporter 0.03 Orthogroups_2024-Update
Seita.5G221700.1 No alias subfamily ABCG transporter 0.03 Orthogroups_2024-Update
Sobic.003G216000.1 No alias subfamily ABCG transporter 0.03 Orthogroups_2024-Update
Sobic.003G216166.1 No alias subfamily ABCG transporter 0.03 Orthogroups_2024-Update
Solyc05g053610 No alias Pleiotropic drug resistance ABC transporter (AHRD V3.3... 0.02 Orthogroups_2024-Update
Sopen11g003170 No alias ABC-2 type transporter 0.02 Orthogroups_2024-Update
Sopen11g003180 No alias ABC-2 type transporter 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0003883 CTP synthase activity IEP Predicted GO
CC GO:0005849 mRNA cleavage factor complex IEP Predicted GO
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Predicted GO
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Predicted GO
BP GO:0006378 mRNA polyadenylation IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
BP GO:0031123 RNA 3'-end processing IEP Predicted GO
BP GO:0031124 mRNA 3'-end processing IEP Predicted GO
BP GO:0043631 RNA polyadenylation IEP Predicted GO
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Predicted GO
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like 163 342
IPR029481 ABC_trans_N 79 135
IPR013525 ABC_2_trans 439 634
No external refs found!