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Description : Unknown function
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Brassica rapa: Brara.A03095.1 | |
| Cluster | HCAA Clusters: Cluster_162 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 79732 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| A4A49_13653 | No alias | pentatricopeptide repeat-containing protein | 0.02 | Orthogroups_2024-Update | |
| Brara.A02436.1 | No alias | RNA editing factor *(CRR2) | 0.03 | Orthogroups_2024-Update | |
| Brara.G01254.1 | No alias | RNA editing factor *(CREF7) | 0.03 | Orthogroups_2024-Update | |
| Brara.G01460.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Brara.I02594.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Brara.K01537.1 | No alias | RNA editing factor *(CRR28) | 0.03 | Orthogroups_2024-Update | |
| GRMZM2G076257 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| GRMZM2G099875 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| GRMZM2G170896 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Glyma.11G008800 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| HORVU3Hr1G079860.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| HORVU5Hr1G105080.1 | No alias | RNA editing factor *(OTP85) | 0.03 | Orthogroups_2024-Update | |
| LOC_Os06g08650 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os10g30760 | No alias | pentatricopeptide, putative, expressed | 0.03 | Orthogroups_2024-Update | |
| MA_81436g0010 | No alias | (at4g21300 : 593.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
| PSME_00023451-RA | No alias | (at1g11290 : 535.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
| Seita.7G086300.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.002G384800.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Solyc03g114660 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.04 | Orthogroups_2024-Update | |
| Solyc06g076900 | No alias | Pentatricopeptide repeat-containing family protein (AHRD... | 0.03 | Orthogroups_2024-Update | |
| Sopen11g024580 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Predicted GO |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Predicted GO |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Predicted GO |
| MF | GO:0004484 | mRNA guanylyltransferase activity | IEP | Predicted GO |
| MF | GO:0004721 | phosphoprotein phosphatase activity | IEP | Predicted GO |
| BP | GO:0006370 | 7-methylguanosine mRNA capping | IEP | Predicted GO |
| BP | GO:0006396 | RNA processing | IEP | Predicted GO |
| BP | GO:0006397 | mRNA processing | IEP | Predicted GO |
| MF | GO:0008138 | protein tyrosine/serine/threonine phosphatase activity | IEP | Predicted GO |
| MF | GO:0008192 | RNA guanylyltransferase activity | IEP | Predicted GO |
| BP | GO:0008380 | RNA splicing | IEP | Predicted GO |
| BP | GO:0009452 | 7-methylguanosine RNA capping | IEP | Predicted GO |
| BP | GO:0016071 | mRNA metabolic process | IEP | Predicted GO |
| BP | GO:0016311 | dephosphorylation | IEP | Predicted GO |
| MF | GO:0016670 | oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor | IEP | Predicted GO |
| MF | GO:0016788 | hydrolase activity, acting on ester bonds | IEP | Predicted GO |
| MF | GO:0016972 | thiol oxidase activity | IEP | Predicted GO |
| BP | GO:0036260 | RNA capping | IEP | Predicted GO |
| MF | GO:0070403 | NAD+ binding | IEP | Predicted GO |
| MF | GO:0070568 | guanylyltransferase activity | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 258 | 284 |
| IPR002885 | Pentatricopeptide_repeat | 490 | 515 |
| IPR002885 | Pentatricopeptide_repeat | 286 | 312 |
| IPR002885 | Pentatricopeptide_repeat | 390 | 415 |
| IPR002885 | Pentatricopeptide_repeat | 84 | 131 |
| IPR002885 | Pentatricopeptide_repeat | 416 | 462 |
| IPR002885 | Pentatricopeptide_repeat | 315 | 362 |
| IPR002885 | Pentatricopeptide_repeat | 183 | 230 |
| No external refs found! |