Brara.A03144.1


Description : regulatory component *(SPA) of COP1-SPA light signal transduction E3 ubiquitin ligase complex & component *(SPA) of substrate adaptor module of CUL4-based ubiquitin ligase complex


Gene families : OG_42_0000717 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000717_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.A03144.1
Cluster HCAA Clusters: Cluster_117

Target Alias Description ECC score Gene Family Method Actions
A4A49_27287 No alias protein spa1-related 3 0.03 Orthogroups_2024-Update
A4A49_35805 No alias e3 ubiquitin-protein ligase cop1 0.05 Orthogroups_2024-Update
At1g53090 No alias SPA4 [Source:UniProtKB/TrEMBL;Acc:A0A178WBA0] 0.03 Orthogroups_2024-Update
At2g32950 No alias FUS1 [Source:UniProtKB/TrEMBL;Acc:A0A178VXE2] 0.03 Orthogroups_2024-Update
Bradi3g57667 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
Brara.D01997.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G020291 No alias SPA (suppressor of phyA-105) protein family 0.02 Orthogroups_2024-Update
GRMZM2G145556 No alias SPA1-related 2 0.02 Orthogroups_2024-Update
Glyma.02G267800 No alias Transducin/WD40 repeat-like superfamily protein 0.04 Orthogroups_2024-Update
LOC_Os02g53140 No alias COP1, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os05g49590 No alias suppressor of phythchrome A, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00003075-RA No alias (at1g53090 : 517.0) Encodes a member of the SPA... 0.03 Orthogroups_2024-Update
Potri.001G399600 No alias SPA1-related 3 0.03 Orthogroups_2024-Update
Potri.014G159300 No alias Transducin/WD40 repeat-like superfamily protein 0.04 Orthogroups_2024-Update
Pp1s154_52V6 No alias ubiquitin ligase protein 0.02 Orthogroups_2024-Update
Pp1s180_148V6 No alias ubiquitin ligase protein 0.02 Orthogroups_2024-Update
Pp1s30_295V6 No alias ubiquitin ligase protein 0.02 Orthogroups_2024-Update
Seita.3G139600.1 No alias regulatory component *(SPA) of COP1-SPA light signal... 0.02 Orthogroups_2024-Update
Seita.5G302800.1 No alias component *(SPA) of substrate adaptor module of... 0.05 Orthogroups_2024-Update
Solyc12g005950 No alias COP1 homolog 0.03 Orthogroups_2024-Update
Solyc12g013840 No alias SPA1-related 3 (AHRD V3.3 *** AT3G15354.3) 0.03 Orthogroups_2024-Update
Sopen07g031310 No alias WD domain, G-beta repeat 0.05 Orthogroups_2024-Update
Sopen11g006790 No alias WD domain, G-beta repeat 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
Type GO Term Name Evidence Source
MF GO:0004014 adenosylmethionine decarboxylase activity IEP Predicted GO
MF GO:0004564 beta-fructofuranosidase activity IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
BP GO:0006595 polyamine metabolic process IEP Predicted GO
BP GO:0006596 polyamine biosynthetic process IEP Predicted GO
BP GO:0006597 spermine biosynthetic process IEP Predicted GO
BP GO:0008215 spermine metabolic process IEP Predicted GO
BP GO:0008216 spermidine metabolic process IEP Predicted GO
BP GO:0008295 spermidine biosynthetic process IEP Predicted GO
BP GO:0009309 amine biosynthetic process IEP Predicted GO
BP GO:0010035 response to inorganic substance IEP Predicted GO
BP GO:0010038 response to metal ion IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0016157 sucrose synthase activity IEP Predicted GO
MF GO:0016790 thiolester hydrolase activity IEP Predicted GO
CC GO:0031082 BLOC complex IEP Predicted GO
CC GO:0031083 BLOC-1 complex IEP Predicted GO
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Predicted GO
CC GO:0044445 cytosolic part IEP Predicted GO
BP GO:0097164 ammonium ion metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 652 687
IPR001680 WD40_repeat 565 603
No external refs found!