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  5. Brara.A03178.1

Brara.A03178.1


Description : Unknown function


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.A03178.1
Cluster HCAA Clusters: Cluster_81

Target Alias Description ECC score Gene Family Method Actions
At1g17630 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Orthogroups_2024-Update
At4g21300 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.02 Orthogroups_2024-Update
Bradi1g60637 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Brara.H03084.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G433600.1 No alias RNA editing factor *(OTP72) 0.03 Orthogroups_2024-Update
Sobic.006G275900.1 No alias Unknown function 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003747 translation release factor activity IEP Predicted GO
BP GO:0006415 translational termination IEP Predicted GO
BP GO:0006486 protein glycosylation IEP Predicted GO
MF GO:0008079 translation termination factor activity IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0008373 sialyltransferase activity IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
BP GO:0022411 cellular component disassembly IEP Predicted GO
BP GO:0032984 protein-containing complex disassembly IEP Predicted GO
BP GO:0043413 macromolecule glycosylation IEP Predicted GO
BP GO:0043624 cellular protein complex disassembly IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
BP GO:0070085 glycosylation IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 503 523
IPR002885 Pentatricopeptide_repeat 296 320
IPR002885 Pentatricopeptide_repeat 95 114
IPR002885 Pentatricopeptide_repeat 326 356
IPR002885 Pentatricopeptide_repeat 224 254
IPR002885 Pentatricopeptide_repeat 428 475
IPR002885 Pentatricopeptide_repeat 120 166
No external refs found!