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Description : RNA editing factor *(OTP72)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Brassica rapa: Brara.A03228.1 | |
| Cluster | HCAA Clusters: Cluster_187 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 27025 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
| 34785 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
| 412514 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
| 93439 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Bradi1g68870 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Bradi2g53377 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
| HORVU7Hr1G030840.1 | No alias | RNA editing factor *(MEF29) | 0.04 | Orthogroups_2024-Update | |
| PSME_00007759-RA | No alias | (at3g12770 : 656.0) Encodes a pentatricopeptide repeat... | 0.04 | Orthogroups_2024-Update | |
| PSME_00010400-RA | No alias | (at4g02750 : 490.0) Tetratricopeptide repeat (TPR)-like... | 0.05 | Orthogroups_2024-Update | |
| PSME_00025245-RA | No alias | (at3g03580 : 656.0) Tetratricopeptide repeat (TPR)-like... | 0.05 | Orthogroups_2024-Update | |
| Potri.001G217600 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Potri.003G164900 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Potri.007G146800 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.012G048800 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Potri.017G083900 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Pp1s186_64V6 | No alias | hypothetical protein [Oryza sativa (japonica cultivar-group)] | 0.04 | Orthogroups_2024-Update | |
| Seita.3G006500.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Seita.3G224300.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Seita.4G100100.1 | No alias | Unknown function | 0.05 | Orthogroups_2024-Update | |
| Seita.9G007900.1 | No alias | Unknown function | 0.05 | Orthogroups_2024-Update | |
| Seita.9G489500.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Sobic.001G282300.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Sobic.003G336400.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Solyc01g006920 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.02 | Orthogroups_2024-Update | |
| Solyc01g100800 | No alias | Pentatricopeptide repeat-containing family protein (AHRD... | 0.03 | Orthogroups_2024-Update | |
| Solyc03g007840 | No alias | Pentatricopeptide repeat-containing protein, putative... | 0.03 | Orthogroups_2024-Update | |
| Solyc03g063690 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
| Solyc03g093630 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
| Solyc04g051480 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
| Solyc07g042760 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
| Solyc07g055310 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.02 | Orthogroups_2024-Update | |
| Solyc11g011860 | No alias | Pentatricopeptide repeat-containing protein family (AHRD... | 0.02 | Orthogroups_2024-Update | |
| Solyc11g071370 | No alias | Pentatricopeptide repeat-containing family protein (AHRD... | 0.03 | Orthogroups_2024-Update | |
| Solyc12g042400 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.02 | Orthogroups_2024-Update | |
| Sopen02g025050 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen02g033370 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
| Sopen09g004550 | No alias | PPR repeat family | 0.04 | Orthogroups_2024-Update | |
| Sopen10g004380 | No alias | PPR repeat | 0.04 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 217 | 246 |
| IPR002885 | Pentatricopeptide_repeat | 289 | 312 |
| IPR002885 | Pentatricopeptide_repeat | 115 | 144 |
| IPR002885 | Pentatricopeptide_repeat | 595 | 615 |
| IPR002885 | Pentatricopeptide_repeat | 87 | 114 |
| IPR002885 | Pentatricopeptide_repeat | 184 | 208 |
| IPR002885 | Pentatricopeptide_repeat | 419 | 466 |
| IPR002885 | Pentatricopeptide_repeat | 519 | 568 |
| IPR002885 | Pentatricopeptide_repeat | 314 | 365 |
| No external refs found! |