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  5. Brara.A03279.1

Brara.A03279.1


Description : sporopollenin precursor exporter *(ABCG26) & subfamily ABCG transporter


Gene families : OG_42_0000429 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000429_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.A03279.1
Cluster HCAA Clusters: Cluster_103

Target Alias Description ECC score Gene Family Method Actions
Brara.D00598.1 No alias subfamily ABCG transporter 0.04 Orthogroups_2024-Update
Potri.013G111900 No alias ATP-binding casette family G25 0.03 Orthogroups_2024-Update
Pp1s138_50V6 No alias white-brown-complex abc transporter family 0.02 Orthogroups_2024-Update
Pp1s169_25V6 No alias white-brown-complex abc transporter family 0.03 Orthogroups_2024-Update
Pp1s270_82V6 No alias white-brown-complex abc transporter family 0.02 Orthogroups_2024-Update
Solyc12g013640 No alias ABC transporter G family member (AHRD V3.3 *** A0A0K9Q0M2_ZOSMR) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
MF GO:0017069 snRNA binding IEP Predicted GO
MF GO:0017070 U6 snRNA binding IEP Predicted GO
MF GO:0030623 U5 snRNA binding IEP Predicted GO
CC GO:0031012 extracellular matrix IEP Predicted GO
CC GO:0044421 extracellular region part IEP Predicted GO
InterPro domains Description Start Stop
IPR013525 ABC_2_trans 411 619
IPR003439 ABC_transporter-like 103 253
No external refs found!