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  5. Brara.A03306.1

Brara.A03306.1


Description : CMF transcription factor


Gene families : OG_42_0000610 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000610_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.A03306.1
Cluster HCAA Clusters: Cluster_265

Target Alias Description ECC score Gene Family Method Actions
At5g41380 No alias CCT motif family protein [Source:UniProtKB/TrEMBL;Acc:Q5Q0A4] 0.03 Orthogroups_2024-Update
Brara.C03438.1 No alias CMF transcription factor 0.02 Orthogroups_2024-Update
Glyma.10G134400 No alias CCT motif family protein 0.05 Orthogroups_2024-Update
Glyma.11G146690 No alias CCT motif family protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G039150.5 No alias CMF transcription factor 0.03 Orthogroups_2024-Update
LOC_Os01g61900 No alias CCT motif family protein, expressed 0.03 Orthogroups_2024-Update
Pp1s70_278V6 No alias MYC6.9; hypothetical protein [Arabidopsis thaliana] 0.02 Orthogroups_2024-Update
Seita.3G212400.1 No alias CMF transcription factor 0.03 Orthogroups_2024-Update
evm.model.contig_494.11 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Predicted GO
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP Predicted GO
MF GO:0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity IEP Predicted GO
MF GO:0005375 copper ion transmembrane transporter activity IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
CC GO:0005875 microtubule associated complex IEP Predicted GO
BP GO:0006528 asparagine metabolic process IEP Predicted GO
BP GO:0006529 asparagine biosynthetic process IEP Predicted GO
BP GO:0006825 copper ion transport IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
BP GO:0009066 aspartate family amino acid metabolic process IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
BP GO:0010215 cellulose microfibril organization IEP Predicted GO
BP GO:0015936 coenzyme A metabolic process IEP Predicted GO
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
BP GO:0030001 metal ion transport IEP Predicted GO
BP GO:0030198 extracellular matrix organization IEP Predicted GO
CC GO:0030286 dynein complex IEP Predicted GO
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0035434 copper ion transmembrane transport IEP Predicted GO
BP GO:0043062 extracellular structure organization IEP Predicted GO
MF GO:0046873 metal ion transmembrane transporter activity IEP Predicted GO
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Predicted GO
BP GO:0051259 protein complex oligomerization IEP Predicted GO
BP GO:0051260 protein homooligomerization IEP Predicted GO
InterPro domains Description Start Stop
IPR010402 CCT_domain 137 179
No external refs found!