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  5. Brara.A03315.1

Brara.A03315.1


Description : GARP subgroup PHL transcription factor


Gene families : OG_42_0000021 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000021_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.A03315.1
Cluster HCAA Clusters: Cluster_345

Target Alias Description ECC score Gene Family Method Actions
270428 No alias phosphate starvation response 1 0.02 Orthogroups_2024-Update
A4A49_11176 No alias putative myb family transcription factor 0.03 Orthogroups_2024-Update
AC234155.1_FG002 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
At1g32240 No alias Probable transcription factor KAN2... 0.03 Orthogroups_2024-Update
At2g20400 No alias myb-like HTH transcriptional regulator family protein... 0.03 Orthogroups_2024-Update
Bradi1g14480 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g36710 No alias Homeodomain-like superfamily protein 0.01 Orthogroups_2024-Update
Bradi3g52500 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi5g20520 No alias Homeodomain-like superfamily protein 0.04 Orthogroups_2024-Update
Brara.E03448.1 No alias GARP subgroup PHL transcription factor & transcription... 0.03 Orthogroups_2024-Update
Brara.I01162.1 No alias GARP subgroup PHL transcription factor & transcription... 0.03 Orthogroups_2024-Update
GRMZM2G052544 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G090230 No alias Homeodomain-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.01G049100 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.03G143600 No alias myb-like HTH transcriptional regulator family protein 0.03 Orthogroups_2024-Update
Glyma.09G113000 No alias myb-like HTH transcriptional regulator family protein 0.03 Orthogroups_2024-Update
Glyma.11G183400 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G102040.15 No alias GARP subgroup PHL transcription factor 0.02 Orthogroups_2024-Update
LOC_Os04g51130 No alias expressed protein 0.02 Orthogroups_2024-Update
LOC_Os08g06370 No alias MYB family transcription factor, putative, expressed 0.03 Orthogroups_2024-Update
MA_10251997g0010 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
MA_10266929g0010 No alias (at2g01060 : 139.0) myb-like HTH transcriptional... 0.05 Orthogroups_2024-Update
MA_335624g0020 No alias (at4g28610 : 125.0) Similar to phosphate starvation... 0.03 Orthogroups_2024-Update
PSME_00003323-RA No alias (at3g24120 : 251.0) Homeodomain-like superfamily... 0.02 Orthogroups_2024-Update
PSME_00040944-RA No alias (at3g04030 : 275.0) Homeodomain-like superfamily... 0.02 Orthogroups_2024-Update
PSME_00043566-RA No alias (at3g04030 : 229.0) Homeodomain-like superfamily... 0.03 Orthogroups_2024-Update
Potri.001G280000 No alias myb-like HTH transcriptional regulator family protein 0.03 Orthogroups_2024-Update
Potri.003G096300 No alias Homeodomain-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.004G082400 No alias Homeodomain-like superfamily protein 0.04 Orthogroups_2024-Update
Potri.008G142000 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.010G099600 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.017G054800 No alias Homeodomain-like superfamily protein 0.05 Orthogroups_2024-Update
Pp1s55_182V6 No alias T3G21.3; myb family transcription factor [Arabidopsis thaliana] 0.03 Orthogroups_2024-Update
Seita.6G121500.1 No alias GARP subgroup PHL transcription factor 0.03 Orthogroups_2024-Update
Seita.9G419000.1 No alias GARP subgroup PHL transcription factor 0.03 Orthogroups_2024-Update
Sobic.004G058700.1 No alias regulatory protein *(FE) of florigen biosynthesis & GARP... 0.02 Orthogroups_2024-Update
Solyc06g008200 No alias Myb-like transcription factor family protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc08g076400 No alias Myb family transcription factor family protein (AHRD... 0.03 Orthogroups_2024-Update
Solyc09g091880 No alias Myb family transcription factor APL (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Predicted GO
BP GO:0000097 sulfur amino acid biosynthetic process IEP Predicted GO
BP GO:0001101 response to acid chemical IEP Predicted GO
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Predicted GO
MF GO:0004612 phosphoenolpyruvate carboxykinase (ATP) activity IEP Predicted GO
BP GO:0006006 glucose metabolic process IEP Predicted GO
BP GO:0006094 gluconeogenesis IEP Predicted GO
BP GO:0006534 cysteine metabolic process IEP Predicted GO
BP GO:0006535 cysteine biosynthetic process from serine IEP Predicted GO
BP GO:0006563 L-serine metabolic process IEP Predicted GO
BP GO:0006575 cellular modified amino acid metabolic process IEP Predicted GO
BP GO:0006644 phospholipid metabolic process IEP Predicted GO
BP GO:0006658 phosphatidylserine metabolic process IEP Predicted GO
BP GO:0006659 phosphatidylserine biosynthetic process IEP Predicted GO
BP GO:0006914 autophagy IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
BP GO:0008654 phospholipid biosynthetic process IEP Predicted GO
MF GO:0009001 serine O-acetyltransferase activity IEP Predicted GO
BP GO:0009069 serine family amino acid metabolic process IEP Predicted GO
BP GO:0009070 serine family amino acid biosynthetic process IEP Predicted GO
BP GO:0010035 response to inorganic substance IEP Predicted GO
BP GO:0010167 response to nitrate IEP Predicted GO
BP GO:0015698 inorganic anion transport IEP Predicted GO
BP GO:0015706 nitrate transport IEP Predicted GO
MF GO:0016407 acetyltransferase activity IEP Predicted GO
MF GO:0016412 serine O-acyltransferase activity IEP Predicted GO
MF GO:0016413 O-acetyltransferase activity IEP Predicted GO
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Predicted GO
BP GO:0019319 hexose biosynthetic process IEP Predicted GO
BP GO:0019344 cysteine biosynthetic process IEP Predicted GO
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Predicted GO
BP GO:0046364 monosaccharide biosynthetic process IEP Predicted GO
BP GO:0046474 glycerophospholipid biosynthetic process IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
BP GO:0061919 process utilizing autophagic mechanism IEP Predicted GO
BP GO:1901698 response to nitrogen compound IEP Predicted GO
BP GO:1901700 response to oxygen-containing compound IEP Predicted GO
CC GO:1902554 serine/threonine protein kinase complex IEP Predicted GO
CC GO:1902911 protein kinase complex IEP Predicted GO
CC GO:1990316 Atg1/ULK1 kinase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001005 SANT/Myb 26 74
IPR025756 Myb_CC_LHEQLE 123 162
No external refs found!