1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.A03518.1

Brara.A03518.1


Description : effector receptor *(NLR)


Gene families : OG_42_0000010 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.A03518.1
Cluster HCAA Clusters: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
A4A49_13471 No alias tmv resistance protein n 0.05 Orthogroups_2024-Update
At5g41550 No alias Disease resistance protein (TIR-NBS-LRR class) family... 0.03 Orthogroups_2024-Update
Brara.B00741.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Glyma.06G267400 No alias disease resistance protein (TIR-NBS-LRR class), putative 0.03 Orthogroups_2024-Update
Glyma.08G301200 No alias Disease resistance protein (TIR-NBS-LRR class) family 0.06 Orthogroups_2024-Update
Glyma.15G160900 No alias Disease resistance protein (TIR-NBS-LRR class) family 0.03 Orthogroups_2024-Update
Glyma.16G006400 No alias Disease resistance protein (TIR-NBS-LRR class) family 0.04 Orthogroups_2024-Update
MA_10434398g0010 No alias (at1g27170 : 414.0) transmembrane receptors;ATP binding;... 0.04 Orthogroups_2024-Update
Potri.017G103800 No alias disease resistance protein (TIR-NBS-LRR class), putative 0.02 Orthogroups_2024-Update
Potri.019G070001 No alias disease resistance protein (TIR-NBS-LRR class) 0.03 Orthogroups_2024-Update
Potri.T038900 No alias transmembrane receptors;ATP binding 0.02 Orthogroups_2024-Update
Potri.T077532 No alias disease resistance protein (TIR-NBS-LRR class), putative 0.03 Orthogroups_2024-Update
Potri.T129400 No alias Disease resistance protein (TIR-NBS-LRR class) family 0.02 Orthogroups_2024-Update
Solyc02g032650 No alias Disease resistance protein (TIR-NBS-LRR class) (AHRD... 0.04 Orthogroups_2024-Update
Solyc12g096880 No alias Disease resistance protein (TIR-NBS-LRR class) family... 0.03 Orthogroups_2024-Update
Sopen02g010550 No alias NB-ARC domain 0.02 Orthogroups_2024-Update
Sopen12g032810 No alias TIR domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0007165 signal transduction IEA 16Dec
MF GO:0043531 ADP binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Predicted GO
MF GO:0003883 CTP synthase activity IEP Predicted GO
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Predicted GO
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
CC GO:0008287 protein serine/threonine phosphatase complex IEP Predicted GO
MF GO:0008430 selenium binding IEP Predicted GO
MF GO:0016409 palmitoyltransferase activity IEP Predicted GO
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Predicted GO
MF GO:0019208 phosphatase regulator activity IEP Predicted GO
MF GO:0019888 protein phosphatase regulator activity IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Predicted GO
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Predicted GO
CC GO:1903293 phosphatase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000157 TIR_dom 11 179
IPR002182 NB-ARC 201 414
IPR011713 Leu-rich_rpt_3 612 629
No external refs found!