1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.A03523.1

Brara.A03523.1


Description : circadian clock factor *(REVEILLE) & transcription factor *(REVEILLE)


Gene families : OG_42_0000380 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000380_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.A03523.1
Cluster HCAA Clusters: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
78045 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
A4A49_01132 No alias protein reveille 8 0.05 Orthogroups_2024-Update
At1g01520 No alias ASG4 [Source:UniProtKB/TrEMBL;Acc:A0A178W835] 0.04 Orthogroups_2024-Update
At1g18330 No alias Protein REVEILLE 7 [Source:UniProtKB/Swiss-Prot;Acc:B3H5A8] 0.04 Orthogroups_2024-Update
At2g46830 No alias Protein CCA1 [Source:UniProtKB/Swiss-Prot;Acc:P92973] 0.1 Orthogroups_2024-Update
At3g09600 No alias Protein REVEILLE 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWU3] 0.06 Orthogroups_2024-Update
At4g01280 No alias Protein REVEILLE 5 [Source:UniProtKB/Swiss-Prot;Acc:C0SVG5] 0.03 Orthogroups_2024-Update
At5g02840 No alias LCL1 [Source:UniProtKB/TrEMBL;Acc:A0A178U8Z5] 0.04 Orthogroups_2024-Update
Bradi1g29680 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g51757 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G118693 No alias Homeodomain-like superfamily protein 0.05 Orthogroups_2024-Update
GRMZM2G145041 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.03G177300 No alias Homeodomain-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.09G167900 No alias Homeodomain-like superfamily protein 0.05 Orthogroups_2024-Update
Glyma.10G048500 No alias Homeodomain-like superfamily protein 0.07 Orthogroups_2024-Update
Glyma.13G136300 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.16G217700 No alias Homeodomain-like superfamily protein 0.07 Orthogroups_2024-Update
HORVU0Hr1G031850.2 No alias circadian clock factor *(REVEILLE) & transcription... 0.03 Orthogroups_2024-Update
HORVU6Hr1G066000.2 No alias circadian clock factor *(REVEILLE) & transcription... 0.03 Orthogroups_2024-Update
HORVU7Hr1G001830.3 No alias circadian clock factor *(REVEILLE) & transcription... 0.03 Orthogroups_2024-Update
HORVU7Hr1G121210.4 No alias transcription factor *(REVEILLE) 0.03 Orthogroups_2024-Update
Kfl00255_0190 kfl00255_0190_v1.... (at1g01060 : 122.0) LHY encodes a myb-related putative... 0.02 Orthogroups_2024-Update
LOC_Os02g46030 No alias MYB family transcription factor, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os06g01670 No alias myb-like DNA-binding domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os06g51260 No alias MYB family transcription factor, putative, expressed 0.06 Orthogroups_2024-Update
Potri.004G074300 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.006G133000 No alias Homeodomain-like superfamily protein 0.04 Orthogroups_2024-Update
Potri.017G144800 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Pp1s198_135V6 No alias dna binding protein 0.02 Orthogroups_2024-Update
Pp1s46_272V6 No alias dna binding protein 0.04 Orthogroups_2024-Update
Sobic.004G279300.1 No alias transcription factor *(REVEILLE) 0.02 Orthogroups_2024-Update
Sobic.004G281800.1 No alias circadian clock factor *(REVEILLE) & transcription... 0.03 Orthogroups_2024-Update
Sobic.010G004300.1 No alias circadian clock factor *(REVEILLE) & transcription... 0.03 Orthogroups_2024-Update
Sobic.010G275700.1 No alias transcription factor *(REVEILLE) 0.04 Orthogroups_2024-Update
Solyc01g095030 No alias Myb family transcription factor family protein (AHRD... 0.05 Orthogroups_2024-Update
Solyc03g098320 No alias Myb transcription factor (AHRD V3.3 *** A0A072UBN0_MEDTR) 0.06 Orthogroups_2024-Update
Solyc10g084370 No alias MYB transcription factor (AHRD V3.3 *** B5TV64_CAMSI) 0.07 Orthogroups_2024-Update
Sopen01g038820 No alias Myb-like DNA-binding domain 0.03 Orthogroups_2024-Update
Sopen03g029070 No alias Myb-like DNA-binding domain 0.06 Orthogroups_2024-Update
evm.model.contig_2210.1 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0004014 adenosylmethionine decarboxylase activity IEP Predicted GO
MF GO:0004332 fructose-bisphosphate aldolase activity IEP Predicted GO
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP Predicted GO
CC GO:0005875 microtubule associated complex IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006576 cellular biogenic amine metabolic process IEP Predicted GO
BP GO:0006595 polyamine metabolic process IEP Predicted GO
BP GO:0006596 polyamine biosynthetic process IEP Predicted GO
BP GO:0006597 spermine biosynthetic process IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Predicted GO
BP GO:0008215 spermine metabolic process IEP Predicted GO
BP GO:0008216 spermidine metabolic process IEP Predicted GO
BP GO:0008295 spermidine biosynthetic process IEP Predicted GO
BP GO:0009309 amine biosynthetic process IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
BP GO:0009733 response to auxin IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Predicted GO
MF GO:0016829 lyase activity IEP Predicted GO
MF GO:0016830 carbon-carbon lyase activity IEP Predicted GO
MF GO:0016831 carboxy-lyase activity IEP Predicted GO
MF GO:0016832 aldehyde-lyase activity IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
CC GO:0030286 dynein complex IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Predicted GO
BP GO:0044106 cellular amine metabolic process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051186 cofactor metabolic process IEP Predicted GO
BP GO:0051188 cofactor biosynthetic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
BP GO:0097164 ammonium ion metabolic process IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001005 SANT/Myb 39 84
No external refs found!