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  5. Brara.A03573.1

Brara.A03573.1


Description : MYB class-R2R3 subgroup-22/23 transcription factor


Gene families : OG_42_0000047 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000047_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.A03573.1
Cluster HCAA Clusters: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
A4A49_10535 No alias myb-related protein 3r-1 0.02 Orthogroups_2024-Update
Bradi3g36740 No alias myb domain protein 105 0.02 Orthogroups_2024-Update
GRMZM2G121570 No alias myb domain protein 119 0.02 Orthogroups_2024-Update
GRMZM2G455869 No alias myb domain protein 52 0.02 Orthogroups_2024-Update
Glyma.19G062000 No alias myb domain protein 98 0.04 Orthogroups_2024-Update
LOC_Os02g09480 No alias myb-like DNA-binding domain containing protein,... 0.02 Orthogroups_2024-Update
Mp3g02830.1 No alias transcription factor (MYB) 0.03 Orthogroups_2024-Update
Potri.009G096000 No alias myb domain protein 73 0.03 Orthogroups_2024-Update
Potri.012G082000 No alias myb domain protein 98 0.02 Orthogroups_2024-Update
Potri.014G022500 No alias myb domain protein 73 0.03 Orthogroups_2024-Update
Pp1s10_267V6 No alias r2r3-myb transcription factor 0.03 Orthogroups_2024-Update
Sobic.003G129000.1 No alias MYB class-R2R3 subgroup-21 transcription factor 0.03 Orthogroups_2024-Update
Solyc04g078420 No alias R2R3MYB transcription factor 70 0.04 Orthogroups_2024-Update
Solyc08g080580 No alias Myb (AHRD V3.3 *** Q948S4_TOBAC) 0.03 Orthogroups_2024-Update
Sopen04g026490 No alias Myb-like DNA-binding domain 0.03 Orthogroups_2024-Update
evm.model.contig_2268.3 No alias (at4g18770 : 119.0) MYB98 is a member of the R2R3-MYB... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEP Predicted GO
MF GO:0001671 ATPase activator activity IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0004089 carbonate dehydratase activity IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
MF GO:0016836 hydro-lyase activity IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
BP GO:0044030 regulation of DNA methylation IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
BP GO:0051052 regulation of DNA metabolic process IEP Predicted GO
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001005 SANT/Myb 100 142
IPR001005 SANT/Myb 48 94
No external refs found!