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  5. Brara.A03657.1

Brara.A03657.1


Description : E3 ubiquitin ligase


Gene families : OG_42_0001073 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001073_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.A03657.1
Cluster HCAA Clusters: Cluster_345

Target Alias Description ECC score Gene Family Method Actions
A4A49_07914 No alias hypothetical protein 0.03 Orthogroups_2024-Update
A4A49_25924 No alias hypothetical protein 0.04 Orthogroups_2024-Update
Brara.J01410.1 No alias E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
LOC_Os06g46366 No alias zinc finger, C3HC4 type, domain containing protein, expressed 0.03 Orthogroups_2024-Update
PSME_00000942-RA No alias (at5g60580 : 219.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
Pp1s85_162V6 No alias protein binding 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Predicted GO
BP GO:0000097 sulfur amino acid biosynthetic process IEP Predicted GO
MF GO:0004197 cysteine-type endopeptidase activity IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
MF GO:0005544 calcium-dependent phospholipid binding IEP Predicted GO
BP GO:0006534 cysteine metabolic process IEP Predicted GO
BP GO:0006535 cysteine biosynthetic process from serine IEP Predicted GO
BP GO:0006563 L-serine metabolic process IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
MF GO:0009001 serine O-acetyltransferase activity IEP Predicted GO
BP GO:0009069 serine family amino acid metabolic process IEP Predicted GO
BP GO:0009070 serine family amino acid biosynthetic process IEP Predicted GO
MF GO:0016407 acetyltransferase activity IEP Predicted GO
MF GO:0016412 serine O-acyltransferase activity IEP Predicted GO
MF GO:0016413 O-acetyltransferase activity IEP Predicted GO
BP GO:0019344 cysteine biosynthetic process IEP Predicted GO
BP GO:0044272 sulfur compound biosynthetic process IEP Predicted GO
BP GO:0071569 protein ufmylation IEP Predicted GO
InterPro domains Description Start Stop
IPR011016 Znf_RING-CH 225 271
No external refs found!