Brara.A03677.1

Description : SMARCA component *(SYD/BRM/MINU)

Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.A03677.1
Cluster	HCAA Clusters: Cluster_73

Target	Alias	Description	ECC score	Gene Family Method
A4A49_57939	No alias	iswi chromatin-remodeling complex atpase chr11	0.03	Orthogroups_2024-Update
Bradi1g78440	No alias	SNF2 domain-containing protein / helicase...	0.04	Orthogroups_2024-Update
GRMZM2G387890	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.05	Orthogroups_2024-Update
HORVU2Hr1G022450.1	No alias	component *(CHR5) of SAGA transcription co-activator...	0.03	Orthogroups_2024-Update
HORVU3Hr1G012850.1	No alias	ATPase component *(CHR11/CHR17) of ISWI chromatin...	0.04	Orthogroups_2024-Update
HORVU4Hr1G008870.18	No alias	chromatin remodeling factor *(DDM1)	0.03	Orthogroups_2024-Update
Kfl00030_0270	kfl00030_0270_v1.1	(at5g66750 : 640.0) Protein is similar to SWI2/SNF2...	0.01	Orthogroups_2024-Update
LOC_Os06g14406	No alias	SYD, putative, expressed	0.02	Orthogroups_2024-Update
Mp5g06580.2	No alias	chromatin remodeling factor (Snf2)	0.02	Orthogroups_2024-Update
Potri.010G020700	No alias	Function unknown	0.04	Orthogroups_2024-Update
Solyc01g090650	No alias	No description available	0.03	Orthogroups_2024-Update
Solyc08g029120	No alias	No description available	0.03	Orthogroups_2024-Update
Sopen02g013810	No alias	SNF2 family N-terminal domain	0.03	Orthogroups_2024-Update
evm.model.tig00000217.24	No alias	(at2g28290 : 140.0) Encodes a SWI2/SNF2-like protein in...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0005524	ATP binding	IEA	16Dec
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042393	histone binding	IEA	16Dec
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004659	prenyltransferase activity	IEP	Predicted GO
CC	GO:0005667	transcription factor complex	IEP	Predicted GO
CC	GO:0005672	transcription factor TFIIA complex	IEP	Predicted GO
BP	GO:0006352	DNA-templated transcription, initiation	IEP	Predicted GO
BP	GO:0006367	transcription initiation from RNA polymerase II promoter	IEP	Predicted GO
MF	GO:0008318	protein prenyltransferase activity	IEP	Predicted GO
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	Predicted GO
BP	GO:0018342	protein prenylation	IEP	Predicted GO
BP	GO:0032774	RNA biosynthetic process	IEP	Predicted GO
CC	GO:0044428	nuclear part	IEP	Predicted GO
CC	GO:0044451	nucleoplasm part	IEP	Predicted GO
CC	GO:0044798	nuclear transcription factor complex	IEP	Predicted GO
CC	GO:0090575	RNA polymerase II transcription factor complex	IEP	Predicted GO
BP	GO:0097354	prenylation	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	714	827
IPR000330	SNF2_N	406	694
IPR029295	SnAC	916	983

External Links

No external refs found!