Brara.A03750.1

Description : component *(eS1) of small ribosomal-subunit (SSU) proteome

Gene families : OG_42_0001814 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001814_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.A03750.1
Cluster	HCAA Clusters: Cluster_254

Target	Alias	Description	ECC score	Gene Family Method
160008	No alias	Ribosomal protein S3Ae	0.02	Orthogroups_2024-Update
271906	No alias	Ribosomal protein S3Ae	0.07	Orthogroups_2024-Update
A4A49_56002	No alias	40s ribosomal protein s3a	0.13	Orthogroups_2024-Update
At3g04840	No alias	40S ribosomal protein S3a-1...	0.05	Orthogroups_2024-Update
Bradi1g71200	No alias	Ribosomal protein S3Ae	0.16	Orthogroups_2024-Update
Bradi1g78170	No alias	Ribosomal protein S3Ae	0.25	Orthogroups_2024-Update
Bradi3g01210	No alias	Ribosomal protein S3Ae	0.17	Orthogroups_2024-Update
Brara.A00356.1	No alias	component *(eS1) of small ribosomal-subunit (SSU) proteome	0.06	Orthogroups_2024-Update
Brara.K00335.1	No alias	component *(eS1) of small ribosomal-subunit (SSU) proteome	0.05	Orthogroups_2024-Update
Cre13.g568650	No alias	Ribosomal protein S3Ae	0.22	Orthogroups_2024-Update
GRMZM2G145258	No alias	Ribosomal protein S3Ae	0.09	Orthogroups_2024-Update
Glyma.01G236600	No alias	Ribosomal protein S3Ae	0.07	Orthogroups_2024-Update
Glyma.10G245200	No alias	Ribosomal protein S3Ae	0.16	Orthogroups_2024-Update
Glyma.11G006600	No alias	Ribosomal protein S3Ae	0.14	Orthogroups_2024-Update
Glyma.20G149400	No alias	Ribosomal protein S3Ae	0.04	Orthogroups_2024-Update
HORVU1Hr1G032060.4	No alias	component *(eS1) of small ribosomal-subunit (SSU) proteome	0.03	Orthogroups_2024-Update
HORVU4Hr1G070370.1	No alias	component *(eS1) of small ribosomal-subunit (SSU) proteome	0.23	Orthogroups_2024-Update
Kfl00143_0140	kfl00143_0140_v1.1	(p33444\|rs3a_catro : 380.0) 40S ribosomal protein S3a...	0.03	Orthogroups_2024-Update
LOC_Os03g10340	No alias	40S ribosomal protein S3a, putative, expressed	0.03	Orthogroups_2024-Update
LOC_Os12g21798	No alias	40S ribosomal protein S3a, putative, expressed	0.03	Orthogroups_2024-Update
MA_124901g0010	No alias	(at4g34670 : 410.0) Ribosomal protein S3Ae; FUNCTIONS...	0.05	Orthogroups_2024-Update
MA_31004g0010	No alias	(at4g34670 : 389.0) Ribosomal protein S3Ae; FUNCTIONS...	0.06	Orthogroups_2024-Update
PSME_00005371-RA	No alias	(at4g34670 : 408.0) Ribosomal protein S3Ae; FUNCTIONS...	0.07	Orthogroups_2024-Update
Potri.005G051200	No alias	Ribosomal protein S3Ae	0.03	Orthogroups_2024-Update
Potri.008G156300	No alias	Ribosomal protein S3Ae	0.06	Orthogroups_2024-Update
Potri.010G083200	No alias	Ribosomal protein S3Ae	0.03	Orthogroups_2024-Update
Pp1s179_15V6	No alias	40s ribosomal protein s3a	0.16	Orthogroups_2024-Update
Pp1s17_306V6	No alias	40s ribosomal protein s3a	0.2	Orthogroups_2024-Update
Pp1s219_50V6	No alias	40s ribosomal protein s3a	0.23	Orthogroups_2024-Update
Pp1s80_113V6	No alias	40s ribosomal protein s3a	0.03	Orthogroups_2024-Update
Pp1s92_47V6	No alias	40s ribosomal protein s3a	0.03	Orthogroups_2024-Update
Seita.2G378300.1	No alias	component *(eS1) of small ribosomal-subunit (SSU) proteome	0.3	Orthogroups_2024-Update
Seita.9G502500.1	No alias	component *(eS1) of small ribosomal-subunit (SSU) proteome	0.25	Orthogroups_2024-Update
Sobic.001G467300.3	No alias	component *(eS1) of small ribosomal-subunit (SSU) proteome	0.14	Orthogroups_2024-Update
Sobic.002G364100.1	No alias	component *(eS1) of small ribosomal-subunit (SSU) proteome	0.32	Orthogroups_2024-Update
Sobic.002G364500.1	No alias	component *(eS1) of small ribosomal-subunit (SSU) proteome	0.23	Orthogroups_2024-Update
Solyc06g072490	No alias	40S ribosomal protein S3a (AHRD V3.3 *** RS3A_TOBAC)	0.3	Orthogroups_2024-Update
Solyc09g082520	No alias	40S ribosomal protein S3a (AHRD V3.3 *** K4CVM9_SOLLC)	0.15	Orthogroups_2024-Update
Sopen06g028860	No alias	Ribosomal S3Ae family	0.3	Orthogroups_2024-Update
Sopen09g031380	No alias	Ribosomal S3Ae family	0.07	Orthogroups_2024-Update
evm.model.contig_2340.2	No alias	(p49397\|rs3a_orysa : 304.0) 40S ribosomal protein S3a...	0.35	Orthogroups_2024-Update
evm.model.tig00020710.39	No alias	(at4g34670 : 313.0) Ribosomal protein S3Ae; FUNCTIONS...	0.17	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0004017	adenylate kinase activity	IEP	Predicted GO
MF	GO:0004455	ketol-acid reductoisomerase activity	IEP	Predicted GO
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Predicted GO
BP	GO:0006082	organic acid metabolic process	IEP	Predicted GO
BP	GO:0006399	tRNA metabolic process	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Predicted GO
BP	GO:0006520	cellular amino acid metabolic process	IEP	Predicted GO
BP	GO:0006553	lysine metabolic process	IEP	Predicted GO
MF	GO:0008097	5S rRNA binding	IEP	Predicted GO
BP	GO:0008652	cellular amino acid biosynthetic process	IEP	Predicted GO
MF	GO:0008837	diaminopimelate epimerase activity	IEP	Predicted GO
BP	GO:0009066	aspartate family amino acid metabolic process	IEP	Predicted GO
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	Predicted GO
BP	GO:0009081	branched-chain amino acid metabolic process	IEP	Predicted GO
BP	GO:0009082	branched-chain amino acid biosynthetic process	IEP	Predicted GO
BP	GO:0009085	lysine biosynthetic process	IEP	Predicted GO
BP	GO:0009089	lysine biosynthetic process via diaminopimelate	IEP	Predicted GO
MF	GO:0016776	phosphotransferase activity, phosphate group as acceptor	IEP	Predicted GO
MF	GO:0016854	racemase and epimerase activity	IEP	Predicted GO
MF	GO:0016855	racemase and epimerase activity, acting on amino acids and derivatives	IEP	Predicted GO
MF	GO:0016874	ligase activity	IEP	Predicted GO
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Predicted GO
MF	GO:0019205	nucleobase-containing compound kinase activity	IEP	Predicted GO
BP	GO:0019752	carboxylic acid metabolic process	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
MF	GO:0036361	racemase activity, acting on amino acids and derivatives	IEP	Predicted GO
BP	GO:0043038	amino acid activation	IEP	Predicted GO
BP	GO:0043039	tRNA aminoacylation	IEP	Predicted GO
BP	GO:0043436	oxoacid metabolic process	IEP	Predicted GO
BP	GO:0043648	dicarboxylic acid metabolic process	IEP	Predicted GO
BP	GO:0044281	small molecule metabolic process	IEP	Predicted GO
BP	GO:0046451	diaminopimelate metabolic process	IEP	Predicted GO
MF	GO:0047661	amino-acid racemase activity	IEP	Predicted GO
MF	GO:0050145	nucleoside monophosphate kinase activity	IEP	Predicted GO
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001593	Ribosomal_S3Ae	16	221

External Links

No external refs found!

Brara.A03750.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation