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  5. Brara.A03836.1

Brara.A03836.1


Description : alpha-class expansin


Gene families : OG_42_0000014 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000014_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.A03836.1
Cluster HCAA Clusters: Cluster_94

Target Alias Description ECC score Gene Family Method Actions
419575 No alias expansin A16 0.03 Orthogroups_2024-Update
A4A49_18887 No alias expansin-a1 0.03 Orthogroups_2024-Update
A4A49_26789 No alias expansin-a3 0.03 Orthogroups_2024-Update
Mp3g03930.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
PSME_00008183-RA No alias (at1g69530 : 380.0) Member of Alpha-Expansin Gene... 0.04 Orthogroups_2024-Update
Pp1s178_63V6 No alias alpha-expansin 1 0.01 Orthogroups_2024-Update
Pp1s33_251V6 No alias expa5 gene for putative alpha expansin protein family EXPA5 0.02 Orthogroups_2024-Update
Sopen02g032810 No alias Pollen allergen 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004357 glutamate-cysteine ligase activity IEP Predicted GO
MF GO:0004470 malic enzyme activity IEP Predicted GO
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Predicted GO
MF GO:0004618 phosphoglycerate kinase activity IEP Predicted GO
CC GO:0005750 mitochondrial respiratory chain complex III IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006099 tricarboxylic acid cycle IEP Predicted GO
BP GO:0006101 citrate metabolic process IEP Predicted GO
BP GO:0016197 endosomal transport IEP Predicted GO
BP GO:0016482 cytosolic transport IEP Predicted GO
MF GO:0016615 malate dehydrogenase activity IEP Predicted GO
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Predicted GO
MF GO:0016881 acid-amino acid ligase activity IEP Predicted GO
BP GO:0016999 antibiotic metabolic process IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
CC GO:0030906 retromer, cargo-selective complex IEP Predicted GO
BP GO:0042147 retrograde transport, endosome to Golgi IEP Predicted GO
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Predicted GO
CC GO:0043190 ATP-binding cassette (ABC) transporter complex IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0045273 respiratory chain complex II IEP Predicted GO
CC GO:0045275 respiratory chain complex III IEP Predicted GO
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Predicted GO
CC GO:0070069 cytochrome complex IEP Predicted GO
CC GO:0070469 respiratory chain IEP Predicted GO
MF GO:0070569 uridylyltransferase activity IEP Predicted GO
BP GO:0072350 tricarboxylic acid metabolic process IEP Predicted GO
CC GO:0098533 ATPase dependent transmembrane transport complex IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
CC GO:0098803 respiratory chain complex IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1902495 transmembrane transporter complex IEP Predicted GO
CC GO:1904949 ATPase complex IEP Predicted GO
CC GO:1990351 transporter complex IEP Predicted GO
InterPro domains Description Start Stop
IPR007117 Expansin_CBD 175 252
IPR009009 RlpA-like_DPBB 79 164
No external refs found!