1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.A03882.1

Brara.A03882.1


Description : AS2/LOB-type transcription factor


Gene families : OG_42_0000544 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000544_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.A03882.1
Cluster HCAA Clusters: Cluster_268

Target Alias Description ECC score Gene Family Method Actions
At3g02550 No alias LOB domain-containing protein 41... 0.02 Orthogroups_2024-Update
Glyma.04G044800 No alias LOB domain-containing protein 39 0.03 Orthogroups_2024-Update
Glyma.17G162000 No alias LOB domain-containing protein 38 0.04 Orthogroups_2024-Update
PSME_00006100-RA No alias (at5g67420 : 192.0) LOB domain-containing protein 37... 0.02 Orthogroups_2024-Update
PSME_00026677-RA No alias (at1g67100 : 203.0) LOB domain-containing protein 40... 0.03 Orthogroups_2024-Update
PSME_00036021-RA No alias (at1g67100 : 88.2) LOB domain-containing protein 40... 0.02 Orthogroups_2024-Update
PSME_00043038-RA No alias (at1g67100 : 208.0) LOB domain-containing protein 40... 0.03 Orthogroups_2024-Update
Potri.007G053600 No alias LOB domain-containing protein 38 0.02 Orthogroups_2024-Update
Potri.008G120600 No alias LOB domain-containing protein 42 0.03 Orthogroups_2024-Update
Potri.012G056800 No alias LOB domain-containing protein 41 0.03 Orthogroups_2024-Update
Seita.3G120000.1 No alias AS2/LOB-type transcription factor 0.02 Orthogroups_2024-Update
Sopen05g005070 No alias Protein of unknown function DUF260 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000726 non-recombinational repair IEP Predicted GO
MF GO:0004721 phosphoprotein phosphatase activity IEP Predicted GO
MF GO:0004834 tryptophan synthase activity IEP Predicted GO
MF GO:0005337 nucleoside transmembrane transporter activity IEP Predicted GO
BP GO:0006302 double-strand break repair IEP Predicted GO
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Predicted GO
BP GO:0006568 tryptophan metabolic process IEP Predicted GO
BP GO:0006576 cellular biogenic amine metabolic process IEP Predicted GO
BP GO:0006586 indolalkylamine metabolic process IEP Predicted GO
BP GO:0007030 Golgi organization IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
BP GO:0015858 nucleoside transport IEP Predicted GO
BP GO:0042430 indole-containing compound metabolic process IEP Predicted GO
BP GO:0044106 cellular amine metabolic process IEP Predicted GO
BP GO:1901264 carbohydrate derivative transport IEP Predicted GO
BP GO:1901642 nucleoside transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR004883 LOB 4 104
No external refs found!